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Sodium in PDB 192d: Recombination-Like Structure of D(Ccgcgg)

Protein crystallography data

The structure of Recombination-Like Structure of D(Ccgcgg), PDB code: 192d was solved by L.Malinina, L.Urpi, X.Salas, T.Huynh-Dinh, J.A.Subirana, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.92
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 34.330, 44.040, 38.270, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / n/a

Sodium Binding Sites:

The binding sites of Sodium atom in the Recombination-Like Structure of D(Ccgcgg) (pdb code 192d). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Recombination-Like Structure of D(Ccgcgg), PDB code: 192d:

Sodium binding site 1 out of 1 in 192d

Go back to Sodium Binding Sites List in 192d
Sodium binding site 1 out of 1 in the Recombination-Like Structure of D(Ccgcgg)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Recombination-Like Structure of D(Ccgcgg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na13

b:2.0
occ:0.50
H2 A:HOH15 2.2 17.8 1.0
H1 A:HOH15 2.3 18.9 1.0
H2 A:HOH14 2.3 15.0 1.0
O A:HOH14 2.4 9.0 1.0
O A:HOH15 2.5 8.2 1.0
O6 A:DG3 2.6 6.3 1.0
H1 A:HOH14 3.3 15.4 1.0
H42 B:DC10 3.3 17.2 1.0
C6 A:DG3 3.6 7.2 1.0
N7 A:DG3 3.7 8.7 1.0
H1 B:HOH31 4.0 14.3 1.0
C5 A:DG3 4.0 6.4 1.0
N4 B:DC10 4.1 4.4 1.0
H41 B:DC10 4.1 18.0 1.0
H42 A:DC4 4.4 16.3 1.0
H41 A:DC4 4.5 17.3 1.0
OP2 A:DC2 4.6 20.1 1.0
O6 B:DG9 4.7 10.4 1.0
N4 A:DC4 4.7 6.3 1.0
C5 A:DC2 4.8 5.8 1.0
N1 A:DG3 4.8 5.0 1.0
C6 A:DC2 4.9 8.1 1.0
O B:HOH31 4.9 13.4 1.0
H2 A:HOH46 5.0 14.8 1.0
C8 A:DG3 5.0 7.1 1.0
O B:HOH36 5.0 6.1 1.0

Reference:

L.Malinina, L.Urpi, X.Salas, T.Huynh-Dinh, J.A.Subirana. Recombination-Like Structure of D(Ccgcgg). J.Mol.Biol. V. 243 484 1994.
ISSN: ISSN 0022-2836
PubMed: 7966274
DOI: 10.1006/JMBI.1994.1674
Page generated: Tue Dec 15 05:21:32 2020

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