Sodium in PDB 9gnw: Universal Psii Assembly Intermediate

All present enzymatic activity of Universal Psii Assembly Intermediate:
1.10.3.9;

The structure of Universal Psii Assembly Intermediate also contains other interesting chemical elements:

Chlorine	(Cl)	2 atoms
Magnesium	(Mg)	35 atoms
Calcium	(Ca)	1 atom
Manganese	(Mn)	4 atoms
Iron	(Fe)	2 atoms

The binding sites of Sodium atom in the Universal Psii Assembly Intermediate (pdb code 9gnw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Universal Psii Assembly Intermediate, PDB code: 9gnw:

Sodium binding site 1 out of 1 in the Universal Psii Assembly Intermediate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Universal Psii Assembly Intermediate within 5.0Å range: probe atom residue distance (Å) B Occ A:Na412 b:50.3 occ:1.00 O A:GLU333 2.6 52.6 1.0 C A:GLU333 3.3 52.6 1.0 CD2 D:LEU352 3.3 55.1 1.0 CD2 A:HIS337 3.3 52.5 1.0 O A:VAL330 3.7 44.5 1.0 N A:GLU333 3.9 52.6 1.0 C A:VAL330 3.9 44.5 1.0 CA D:GLY349 3.9 53.5 1.0 CA A:ARG334 3.9 49.9 1.0 N A:ARG334 4.0 49.9 1.0 O A:GLU329 4.0 45.1 1.0 CB D:LEU352 4.1 55.1 1.0 NE2 A:HIS337 4.1 52.5 1.0 O A:ARG334 4.2 49.9 1.0 CA A:GLU333 4.2 52.6 1.0 N A:MET331 4.2 45.6 1.0 N D:ASN350 4.2 57.1 1.0 N A:HIS332 4.3 47.7 1.0 C A:ARG334 4.3 49.9 1.0 CG D:LEU352 4.3 55.1 1.0 CG A:HIS337 4.3 52.5 1.0 C A:MET331 4.4 45.6 1.0 CA A:MET331 4.4 45.6 1.0 O D:ASN350 4.5 57.1 1.0 CA A:VAL330 4.5 44.5 1.0 N D:GLY349 4.5 53.5 1.0 C D:GLY349 4.5 53.5 1.0 CE1 A:HIS332 4.7 47.7 1.0 ND1 A:HIS332 4.7 47.7 1.0 CB A:HIS337 4.8 52.5 1.0 CB A:GLU333 4.8 52.6 1.0 C A:HIS332 4.9 47.7 1.0 O A:MET331 5.0 45.6 1.0

M.Fadeeva, D.Klaiman, N.Nelson. Universal Psii Assembly Intermediate To Be Published.