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Sodium in PDB 9fox: Half-Closed Codh/Acs in the Reduced State

Enzymatic activity of Half-Closed Codh/Acs in the Reduced State

All present enzymatic activity of Half-Closed Codh/Acs in the Reduced State:
2.3.1.169;

Other elements in 9fox:

The structure of Half-Closed Codh/Acs in the Reduced State also contains other interesting chemical elements:

Nickel (Ni) 4 atoms
Iron (Fe) 24 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Half-Closed Codh/Acs in the Reduced State (pdb code 9fox). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Half-Closed Codh/Acs in the Reduced State, PDB code: 9fox:

Sodium binding site 1 out of 1 in 9fox

Go back to Sodium Binding Sites List in 9fox
Sodium binding site 1 out of 1 in the Half-Closed Codh/Acs in the Reduced State


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Half-Closed Codh/Acs in the Reduced State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na804

b:32.2
occ:1.00
O C:PHE420 2.3 43.9 1.0
O C:GLY417 2.3 36.0 1.0
O C:ASN415 2.5 36.1 1.0
OE2 C:GLU334 2.6 45.0 1.0
O C:PHE331 3.0 40.1 1.0
CD C:GLU334 3.2 47.3 1.0
C C:ASN415 3.3 31.9 1.0
C C:GLY417 3.4 36.1 1.0
C C:PHE420 3.4 43.3 1.0
CG C:GLU334 3.7 40.3 1.0
N C:PHE420 3.8 42.9 1.0
CA C:ASN415 3.8 34.4 1.0
C C:PHE331 3.9 32.3 1.0
CB C:PHE331 4.0 28.4 1.0
OE1 C:GLU334 4.1 47.7 1.0
N C:GLY417 4.1 44.4 1.0
CA C:PHE420 4.1 42.5 1.0
N C:GLY419 4.1 39.0 1.0
C C:TYR416 4.3 36.6 1.0
N C:GLU418 4.3 36.9 1.0
CA C:GLU418 4.3 35.0 1.0
CA C:GLY417 4.3 35.6 1.0
N C:TYR416 4.3 33.2 1.0
O C:THR414 4.4 41.0 1.0
CB C:PHE420 4.5 39.8 1.0
N C:TRP421 4.5 41.3 1.0
CA C:PHE331 4.6 29.4 1.0
CB C:ASN415 4.6 36.3 1.0
C C:GLU418 4.6 42.9 1.0
CA C:TYR416 4.7 31.4 1.0
C C:GLY419 4.7 41.2 1.0
O C:TYR416 4.7 35.5 1.0
OD1 C:ASN415 4.7 39.6 1.0
N C:GLU332 4.7 36.6 1.0
CA C:TRP421 4.8 39.9 1.0
CA C:GLU332 4.8 34.6 1.0
CB C:GLU334 4.9 40.9 1.0
CA C:GLY419 4.9 38.3 1.0

Reference:

J.Ruickoldt, P.Wendler, H.Dobbek. The Codh/Acs Complex Caught in Action To Be Published.
Page generated: Mon Aug 18 17:06:12 2025

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