Sodium in PDB, part 314 (files: 12521-12560),
PDB 9r51-9ys1
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 12521-12560 (PDB 9r51-9ys1).
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9r51 (Na: 2) - Dimeric State of the F420-Reducing Hydrogenase From Methanothermococcus Thermolithotrophicus in Crystalline Form 1
Other atoms:
Fe (72);
Cl (1);
Ni (4);
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9r6u (Na: 1) - Crystal Structure of E. Coli Adenylate Kinase K47A Mutant in Complex with Inhibitor AP5A
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9rj1 (Na: 1) - S-Methylcysteine Synthase (BSAS4) From Common Bean in Complex with Plp, Bez, and Gol
Other atoms:
Cl (1);
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9rpk (Na: 4) - Apo Structure of Arabidopsis Thaliana Nicotinate Mononucleotide Adenylyltransferase
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9rv6 (Na: 1) - 5 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.
Other atoms:
Cl (3);
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9rvi (Na: 1) - 10 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.
Other atoms:
Cl (3);
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9rvo (Na: 1) - 25 Micrometer Hewl Crystals Solved at Room-Temperature Using Fixed- Target Serial Crystallography.
Other atoms:
Cl (3);
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9rwd (Na: 4) - High-Resolution Structure of Human SHMT2 with Covalently Bound Plp (Internal Aldimine)
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9s3y (Na: 2) - Crystal Structure of Ancestral (Methanococcaceae/A19) Malate Dehydrogenase
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9s5l (Na: 2) - Adc-30 Class C Beta-Lactamase in Complex with Benzoxaborole Ak-412
Other atoms:
Cl (4);
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9sko (Na: 8) - Crystal Structure of Hla-A0201 in Complex with Peptide Llwngpmavs
Other atoms:
Cl (11);
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9skp (Na: 4) - Crystal Structure of Hla-A0201 in Complex with Peptide Sllwngpmav
Other atoms:
Cl (5);
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9sl0 (Na: 2) - Crystal Structure of Hla-A0201 in Complex with Peptide Llwngpmav
Other atoms:
Cl (4);
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9u3e (Na: 1) - Monomeric Sarcosine Oxidase From Bacillus Sp. (Soxb) Y254A Mutant
Other atoms:
Cl (2);
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9ugi (Na: 1) - Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography
Other atoms:
Cl (2);
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9unt (Na: 2) - Crystal Structure of UPF0235 Protein PF1765 From Pyrococcus Furiosus
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9v6z (Na: 3) - Crystal Structure of Isoform Chitin Binding Protein From Iberis Umbellata L. (Iucbp III)
Other atoms:
Cl (3);
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9vm1 (Na: 1) - Mvm NS2 Mutant NM42 in Complex with CRM1-Ran-RANBP1
Other atoms:
Mg (1);
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9vvs (Na: 1) - Nad(P)-Dependent Oxidoreductase From Kutzneria Albida
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9vw7 (Na: 1) - Nad(P)-Dependent Oxidoreductase From Kutzneria Albida
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9vwb (Na: 1) - Hama, A Heme-Oxygenase-Like Enzyme
Other atoms:
Fe (1);
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9vyq (Na: 2) - Crystal Structure of UPF0235 Protein PF1765 From Pyrococcus Furiosus Crystallized with Sodium Acetate at pH 8
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9vyr (Na: 2) - Crystal Structure of UPF0235 Protein PF1765 From Pyrococcus Furiosus at pH 6
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9vys (Na: 2) - Crystal Structure of UPF0235 Protein PF1765 From Pyrococcus Furiosus at pH 9
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9vyt (Na: 2) - Crystal Structure of UPF0235 Protein PF1765 From Pyrococcus Furiosus Crystallized with Sodium Citrate at pH 8.0
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9vyv (Na: 2) - Crystal Structure of UPF0235 Protein PF1765 From Pyrococcus Furiosus at pH 4
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9vyw (Na: 2) - Crystal Structure of UPF0235 Protein PF1765 From Pyrococcus Furiosus Crystallized with CACL2 at pH 5
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9vyx (Na: 1) - Crystal Structure of UPF0235 Protein PF1765 From Pyrococcus Furiosus Crystallized with CACL2 at pH 6
Other atoms:
Cl (1);
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9vyy (Na: 1) - Crystal Structure of UPF0235 Protein PF1765 From Pyrococcus Furiosus Crystallized with CACL2 at pH 7
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9wvh (Na: 1) - Crystal Structure of Tonsl Ubl Domain
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9xua (Na: 4) - Hen Egg-White Lysozyme (Hewl) Complexed with Caffeine
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9xy9 (Na: 1) - One of A Series of Engineered Variants of I-Onui Meganuclease Targeting Altered Dna Target Sequence
Other atoms:
Ca (3);
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9y45 (Na: 4) - His-Tagged Beta Galactosidase (Lacz) on A Ni-Nta Lipid Monolayer Grid
Other atoms:
Mg (8);
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9y48 (Na: 1) - SRO7 Bound to His-EXO84 (1-326) on A Nickel-Nta Lipid Monolayer
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9yis (Na: 2) - Crystal Structure of Glutamate Dehydrogenase From Babesia Microti
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9yrw (Na: 4) - Crystal Structure of Cysteinyl-Trna Synthetase (Cysrs) From Plasmodium Falciparum in Complex with O5'-(L-Glutamyl-Sulfamoyl)-Adenosine
Other atoms:
Zn (2);
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9yrx (Na: 4) - Crystal Structure of Cysteinyl-Trna Synthetase (Cysrs) From Plasmodium Falciparum in Complex with Cysteine
Other atoms:
Zn (2);
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9yrz (Na: 4) - Crystal Structure of Cysteinyl-Trna Synthetase (Cysrs) From Plasmodium Falciparum in Complex with Amp
Other atoms:
Zn (2);
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9ys0 (Na: 4) - Crystal Structure of Cysteinyl-Trna Synthetase (Cysrs) From Plasmodium Falciparum in Complex with Adp
Other atoms:
Zn (2);
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9ys1 (Na: 4) - Crystal Structure of Cysteinyl-Trna Synthetase (Cysrs) From Plasmodium Falciparum in Complex with Amp and Cysteine
Other atoms:
Zn (2);
Page generated: Mon Dec 15 11:19:10 2025
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