Sodium in PDB 9kot: Hewl Crystal Soaked in Buffer of PH2.0

The structure of Hewl Crystal Soaked in Buffer of PH2.0, PDB code: 9kot was solved by M.V.Hosur, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.93 / 1.50
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.034, 79.034, 36.734, 90, 90, 90
R / Rfree (%)	17.9 / 22.7

The structure of Hewl Crystal Soaked in Buffer of PH2.0 also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Sodium atom in the Hewl Crystal Soaked in Buffer of PH2.0 (pdb code 9kot). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hewl Crystal Soaked in Buffer of PH2.0, PDB code: 9kot:

Sodium binding site 1 out of 1 in the Hewl Crystal Soaked in Buffer of PH2.0


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hewl Crystal Soaked in Buffer of PH2.0 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na203 b:13.6 occ:0.00 O A:ARG73 2.3 13.4 1.0 O A:SER60 2.4 9.8 1.0 O A:HOH408 2.4 12.9 1.0 O A:CYS64 2.4 8.4 1.0 OG A:SER72 2.5 14.9 1.0 O A:HOH377 2.5 8.8 1.0 CB A:SER72 3.2 15.6 1.0 C A:ARG73 3.4 14.9 1.0 C A:CYS64 3.5 8.8 1.0 C A:SER60 3.5 10.4 1.0 N A:ARG73 3.9 15.0 1.0 CA A:ASN65 4.0 10.2 1.0 C A:SER72 4.1 16.1 1.0 CA A:SER60 4.1 9.9 1.0 N A:ASN65 4.2 9.2 1.0 CA A:SER72 4.3 16.1 1.0 N A:ASN74 4.3 15.3 1.0 CA A:ARG73 4.3 15.9 1.0 CB A:SER60 4.3 8.9 1.0 O A:HOH455 4.4 31.4 1.0 N A:CYS64 4.4 9.2 1.0 CA A:ASN74 4.5 13.9 1.0 O A:ARG61 4.6 15.4 1.0 CB A:ASN74 4.6 14.3 1.0 CA A:CYS64 4.6 8.7 1.0 C A:ARG61 4.6 14.2 1.0 O A:SER72 4.6 16.2 1.0 O A:HOH463 4.6 6.6 1.0 N A:ARG61 4.7 11.7 1.0 N A:ASP66 4.7 8.9 1.0 OD1 A:ASN65 4.7 13.7 1.0 CB A:THR69 4.8 11.3 1.0 CB A:ASN65 4.9 10.7 1.0 N A:TRP62 4.9 12.5 1.0 O A:HOH357 4.9 14.7 1.0 C A:ASN65 4.9 8.9 1.0

M.V.Hosur, M.V.Hosur. N/A N/A.