Sodium in PDB 9jfb: Crystal Structure of L-Threonine-O-3-Phosphate Decarboxylase Cobc

Enzymatic activity of Crystal Structure of L-Threonine-O-3-Phosphate Decarboxylase Cobc

All present enzymatic activity of Crystal Structure of L-Threonine-O-3-Phosphate Decarboxylase Cobc:
4.1.1.81;

Protein crystallography data

The structure of Crystal Structure of L-Threonine-O-3-Phosphate Decarboxylase Cobc, PDB code: 9jfb was solved by M.Jiang, S.Guo, X.Chen, Q.Wei, M.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.85 / 2.20
Space group I 21 3
Cell size a, b, c (Å), α, β, γ (°) 159.418, 159.418, 159.418, 90, 90, 90
R / Rfree (%) 15.5 / 18.5

Other elements in 9jfb:

The structure of Crystal Structure of L-Threonine-O-3-Phosphate Decarboxylase Cobc also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of L-Threonine-O-3-Phosphate Decarboxylase Cobc (pdb code 9jfb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of L-Threonine-O-3-Phosphate Decarboxylase Cobc, PDB code: 9jfb:

Sodium binding site 1 out of 1 in 9jfb

Go back to Sodium Binding Sites List in 9jfb
Sodium binding site 1 out of 1 in the Crystal Structure of L-Threonine-O-3-Phosphate Decarboxylase Cobc


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of L-Threonine-O-3-Phosphate Decarboxylase Cobc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na417

b:29.2
occ:0.50
 O A:HOH735 3.0 26.1 1.0
OG A:SER231 3.1 30.7 1.0
CB A:SER231 3.5 29.5 1.0
CD2 A:LEU206 3.8 33.1 1.0
CB A:PRO233 4.6 28.8 1.0
CG A:PRO233 4.8 29.5 1.0
N A:ALA234 4.9 28.6 1.0

Reference:

M.Jiang, S.Guo, X.Chen, Q.Wei, M.Wang. Crystal Structure of L-Threonine-O-3-Phosphate Decarboxylase Cobc From Sinorhizobium Meliloti Involved in Vitamin B 12 Biosynthesis. Biochem.Biophys.Res.Commun. V. 734 50767 2024.
ISSN: ESSN 1090-2104
PubMed: 39366178
DOI: 10.1016/J.BBRC.2024.150767
Page generated: Thu Oct 31 23:08:21 2024

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