Sodium in PDB 9h3e: Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip

Enzymatic activity of Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip

All present enzymatic activity of Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip:
3.2.1.17;

Protein crystallography data

The structure of Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip, PDB code: 9h3e was solved by P.Pachl, L.Coudray, R.Vincent, C.Sauter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.40 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.16, 79.16, 38.15, 90, 90, 90
R / Rfree (%) 13.8 / 17.7

Other elements in 9h3e:

The structure of Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip (pdb code 9h3e). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip, PDB code: 9h3e:

Sodium binding site 1 out of 1 in 9h3e

Go back to Sodium Binding Sites List in 9h3e
Sodium binding site 1 out of 1 in the Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hen Egg White Lysozyme Crystallization and Structure Determination at Room Temperature in the Crystalchip within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:22.9
occ:0.88
 O A:SER60 2.3 21.4 1.0
O A:CYS64 2.4 20.1 1.0
O A:ARG73 2.5 27.6 1.0
O A:HOH376 2.5 32.5 1.0
OG A:SER72 2.5 30.5 1.0
O A:HOH343 2.5 24.2 1.0
CB A:SER72 3.3 30.3 1.0
C A:CYS64 3.5 18.8 1.0
C A:SER60 3.5 20.5 1.0
C A:ARG73 3.5 27.5 1.0
CA A:ASN65 3.9 20.6 1.0
N A:ARG73 3.9 31.7 1.0
C A:SER72 4.1 32.0 1.0
N A:ASN65 4.1 19.0 1.0
CA A:SER60 4.2 17.3 1.0
CB A:SER60 4.4 17.1 1.0
CA A:ARG73 4.4 32.4 1.0
CA A:SER72 4.4 32.2 1.0
N A:ASN74 4.4 25.5 1.0
N A:CYS64 4.4 18.4 1.0
C A:ARG61 4.5 24.5 1.0
O A:ARG61 4.5 24.8 1.0
N A:ARG61 4.6 21.5 1.0
CA A:ASN74 4.6 25.6 1.0
CA A:CYS64 4.6 17.0 1.0
O A:SER72 4.6 32.1 1.0
N A:ASP66 4.7 17.6 1.0
CA A:ARG61 4.7 25.4 1.0
CB A:ASN74 4.7 25.6 1.0
CB A:THR69 4.8 19.7 1.0
N A:TRP62 4.8 22.9 1.0
CL A:CL204 4.8 30.6 0.7
CB A:ASN65 4.8 24.4 1.0
OD1 A:ASN65 4.9 32.2 1.0
O A:HOH386 4.9 47.9 1.0
C A:ASN65 4.9 19.6 1.0
O A:THR69 5.0 26.2 1.0

Reference:

P.Pachl, L.Coudray, R.Vincent, L.Nilles, H.Scheer, C.Ritzenthaler, A.Fejfarova, P.Rezacova, S.Engilberge, C.Sauter. Protein Crystallization and Structure Determination at Room Temperature in the Crystalchip. Febs Open Bio 2024.
ISSN: ESSN 2211-5463
PubMed: 39572886
DOI: 10.1002/2211-5463.13932
Page generated: Tue Dec 10 21:21:02 2024

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