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Sodium in PDB 9ghx: Lysozyme Covalently Bound to Fac-[Re(Co)3-Imidazole] Complex, Incubated For 112 Weeks. Data Collection Done at Mammalian Body Temperature.

Enzymatic activity of Lysozyme Covalently Bound to Fac-[Re(Co)3-Imidazole] Complex, Incubated For 112 Weeks. Data Collection Done at Mammalian Body Temperature.

All present enzymatic activity of Lysozyme Covalently Bound to Fac-[Re(Co)3-Imidazole] Complex, Incubated For 112 Weeks. Data Collection Done at Mammalian Body Temperature.:
3.2.1.17;

Protein crystallography data

The structure of Lysozyme Covalently Bound to Fac-[Re(Co)3-Imidazole] Complex, Incubated For 112 Weeks. Data Collection Done at Mammalian Body Temperature., PDB code: 9ghx was solved by F.J.F.Jacobs, A.Brink, J.R.Helliwell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.44 / 2.19
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 81.493, 81.493, 37.413, 90, 90, 90
R / Rfree (%) 20.5 / 27.1

Other elements in 9ghx:

The structure of Lysozyme Covalently Bound to Fac-[Re(Co)3-Imidazole] Complex, Incubated For 112 Weeks. Data Collection Done at Mammalian Body Temperature. also contains other interesting chemical elements:

Rhenium (Re) 5 atoms
Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Lysozyme Covalently Bound to Fac-[Re(Co)3-Imidazole] Complex, Incubated For 112 Weeks. Data Collection Done at Mammalian Body Temperature. (pdb code 9ghx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Lysozyme Covalently Bound to Fac-[Re(Co)3-Imidazole] Complex, Incubated For 112 Weeks. Data Collection Done at Mammalian Body Temperature., PDB code: 9ghx:

Sodium binding site 1 out of 1 in 9ghx

Go back to Sodium Binding Sites List in 9ghx
Sodium binding site 1 out of 1 in the Lysozyme Covalently Bound to Fac-[Re(Co)3-Imidazole] Complex, Incubated For 112 Weeks. Data Collection Done at Mammalian Body Temperature.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Lysozyme Covalently Bound to Fac-[Re(Co)3-Imidazole] Complex, Incubated For 112 Weeks. Data Collection Done at Mammalian Body Temperature. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na208

b:36.4
occ:1.00
 O A:SER60 2.4 26.5 1.0
O A:ARG73 2.4 33.0 1.0
O A:CYS64 2.4 23.9 1.0
OG A:SER72 2.5 32.2 1.0
O A:HOH315 2.6 25.0 1.0
O A:HOH305 2.8 43.5 1.0
HB2 A:SER72 2.9 43.9 1.0
HA A:ASN65 3.2 39.6 1.0
CB A:SER72 3.2 36.5 1.0
HG A:SER72 3.2 38.7 1.0
C A:ARG73 3.4 33.4 1.0
C A:SER60 3.5 25.8 1.0
C A:CYS64 3.6 28.6 1.0
HB2 A:SER60 3.6 28.6 1.0
HB2 A:ASN74 3.8 33.9 1.0
HB A:THR69 3.9 32.6 1.0
N A:ARG73 3.9 35.3 1.0
H A:ARG73 3.9 42.4 1.0
HB3 A:SER72 3.9 43.9 1.0
HA A:SER60 3.9 31.9 1.0
HA A:ASN74 4.0 38.5 1.0
H A:CYS64 4.0 31.2 1.0
C A:SER72 4.0 39.8 1.0
CA A:ASN65 4.0 33.0 1.0
CA A:SER60 4.2 26.6 1.0
O A:ARG61 4.2 35.9 1.0
H A:ASP66 4.2 33.4 1.0
CA A:SER72 4.2 44.3 1.0
N A:ASN65 4.2 27.6 1.0
N A:ASN74 4.3 33.7 1.0
CA A:ARG73 4.3 38.1 1.0
CB A:SER60 4.3 23.8 1.0
C A:ARG61 4.4 31.4 1.0
HA A:ARG61 4.4 33.2 1.0
CA A:ASN74 4.5 32.0 1.0
HB2 A:ASN65 4.5 39.2 1.0
N A:CYS64 4.5 26.0 1.0
N A:ARG61 4.6 33.4 1.0
CL A:CL203 4.6 43.4 1.0
O A:SER72 4.6 33.8 1.0
CB A:ASN74 4.6 28.2 1.0
HG1 A:THR69 4.6 29.8 1.0
CA A:ARG61 4.7 27.6 1.0
CA A:CYS64 4.7 23.1 1.0
N A:TRP62 4.7 33.4 1.0
HA A:SER72 4.7 53.2 1.0
CB A:THR69 4.8 27.1 1.0
HA A:ARG73 4.8 45.8 1.0
CB A:ASN65 4.8 32.6 1.0
O A:THR69 4.8 33.8 1.0
HG21 A:THR69 4.8 32.5 1.0
N A:ASP66 4.9 27.8 1.0
OD1 A:ASN65 5.0 40.0 1.0

Reference:

F.J.F.Jacobs, J.R.Helliwell, A.Brink. Body Temperature Protein X-Ray Crystallography at 37C: A Rhenium Protein Complex Seeking A Physiological Condition Structure Chem.Commun.(Camb.) 2024.
ISSN: ESSN 1364-548X
DOI: 10.1039/D4CC04245J
Page generated: Thu Oct 31 23:05:59 2024

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