Sodium in PDB 9gcv: Identification of Chloride Ions in Lysozyme at Long Wavelengths

All present enzymatic activity of Identification of Chloride Ions in Lysozyme at Long Wavelengths:
3.2.1.17;

The structure of Identification of Chloride Ions in Lysozyme at Long Wavelengths, PDB code: 9gcv was solved by K.El Omari, I.Forsyth, C.M.Orr, A.Wagner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.88 / 2.70
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.031, 79.031, 36.897, 90, 90, 90
R / Rfree (%)	18.8 / 21.7

The structure of Identification of Chloride Ions in Lysozyme at Long Wavelengths also contains other interesting chemical elements:

Chlorine

(Cl)

5 atoms

The binding sites of Sodium atom in the Identification of Chloride Ions in Lysozyme at Long Wavelengths (pdb code 9gcv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Identification of Chloride Ions in Lysozyme at Long Wavelengths, PDB code: 9gcv:

Sodium binding site 1 out of 1 in the Identification of Chloride Ions in Lysozyme at Long Wavelengths


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Identification of Chloride Ions in Lysozyme at Long Wavelengths within 5.0Å range: probe atom residue distance (Å) B Occ A:Na200 b:36.3 occ:1.00 O A:CYS64 2.3 20.1 1.0 O A:HOH315 2.3 10.0 1.0 O A:ARG73 2.5 20.2 1.0 OG A:SER72 2.7 21.1 1.0 O A:SER60 2.7 21.7 1.0 C A:CYS64 3.3 20.6 1.0 C A:ARG73 3.4 20.9 1.0 CB A:SER72 3.6 22.4 1.0 CA A:ASN65 3.6 20.0 1.0 C A:SER60 3.8 20.5 1.0 N A:ASN65 3.9 20.3 1.0 N A:ARG73 4.0 22.6 1.0 N A:ASN74 4.2 21.4 1.0 C A:SER72 4.3 22.1 1.0 CA A:ARG73 4.3 21.9 1.0 CA A:ASN74 4.4 21.4 1.0 CA A:SER60 4.4 19.1 1.0 CB A:ASN74 4.4 20.7 1.0 N A:CYS64 4.4 20.3 1.0 OD1 A:ASN65 4.4 22.7 1.0 CB A:ASN65 4.5 20.8 1.0 N A:ASP66 4.5 19.3 1.0 CB A:SER60 4.5 17.6 1.0 CA A:CYS64 4.5 21.2 1.0 CA A:SER72 4.5 23.1 1.0 C A:ASN65 4.6 20.8 1.0 CL A:CL204 4.7 21.8 1.0 O A:ARG61 4.8 22.4 1.0 C A:ARG61 4.8 23.7 1.0 O A:SER72 4.8 20.9 1.0 N A:ARG61 4.9 22.3 1.0 CG A:ASN65 4.9 22.1 1.0 CA A:ARG61 5.0 24.6 1.0

K.El Omari, I.Forsyth, R.Duman, C.M.Orr, V.Mykhaylyk, E.J.Mancini, A.Wagner. Utilizing Anomalous Signals For Element Identification in Macromolecular Crystallography. Acta Crystallogr D Struct 2024BIOL.
ISSN: ISSN 2059-7983
PubMed: 39291627
DOI: 10.1107/S2059798324008659