Sodium in PDB 9fw2: Sars Cov-2 NSP10 in Complex with the Exon Domain From NSP14

Protein crystallography data

The structure of Sars Cov-2 NSP10 in Complex with the Exon Domain From NSP14, PDB code: 9fw2 was solved by S.Z.Fisher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.98 / 1.77
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 92.029, 104.782, 55.124, 90, 90, 90
R / Rfree (%) 16.7 / 18.3

Other elements in 9fw2:

The structure of Sars Cov-2 NSP10 in Complex with the Exon Domain From NSP14 also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Sars Cov-2 NSP10 in Complex with the Exon Domain From NSP14 (pdb code 9fw2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Sars Cov-2 NSP10 in Complex with the Exon Domain From NSP14, PDB code: 9fw2:

Sodium binding site 1 out of 1 in 9fw2

Go back to Sodium Binding Sites List in 9fw2
Sodium binding site 1 out of 1 in the Sars Cov-2 NSP10 in Complex with the Exon Domain From NSP14


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Sars Cov-2 NSP10 in Complex with the Exon Domain From NSP14 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na304

b:36.5
occ:1.00
O B:HOH433 2.6 30.7 1.0
O B:HOH511 2.7 28.1 1.0
O B:ALA138 2.9 18.0 1.0
N B:ALA138 3.5 15.0 1.0
CE B:MET153 3.6 18.3 1.0
C B:ALA138 3.7 16.9 1.0
CA B:ALA138 3.9 17.3 1.0
CB B:ALA138 4.0 16.6 1.0
CG B:PRO121 4.1 17.1 1.0
C B:SER137 4.5 15.3 1.0
O B:VAL136 4.5 15.8 1.0
O B:HOH429 4.6 29.9 1.0
CB B:PRO121 4.7 15.0 1.0
CD B:PRO121 4.7 18.0 1.0
CA B:SER137 4.8 15.1 1.0
O B:MET153 4.8 22.6 1.0
N B:LYS139 4.8 16.6 1.0

Reference:

S.Z.Fisher, S.Z.Fisher. N/A N/A.
Page generated: Wed Oct 9 14:41:16 2024

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