Sodium in PDB 9eu5: Ssx Structure of Autotaxin at Room Temperature

Enzymatic activity of Ssx Structure of Autotaxin at Room Temperature

All present enzymatic activity of Ssx Structure of Autotaxin at Room Temperature:
3.1.4.39;

Protein crystallography data

The structure of Ssx Structure of Autotaxin at Room Temperature, PDB code: 9eu5 was solved by M.C.Eymery, A.A.Mccarthy, N.Foos, S.Basu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 62.45 / 3.00
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 54.51, 61.19, 65.01, 102.57, 99.13, 93.67
R / Rfree (%) 22.5 / 28.1

Other elements in 9eu5:

The structure of Ssx Structure of Autotaxin at Room Temperature also contains other interesting chemical elements:

Iodine (I) 15 atoms
Zinc (Zn) 9 atoms
Calcium (Ca) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Ssx Structure of Autotaxin at Room Temperature (pdb code 9eu5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Ssx Structure of Autotaxin at Room Temperature, PDB code: 9eu5:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 9eu5

Go back to Sodium Binding Sites List in 9eu5
Sodium binding site 1 out of 2 in the Ssx Structure of Autotaxin at Room Temperature


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Ssx Structure of Autotaxin at Room Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na929

b:74.7
occ:1.00
O3 A:GOL902 2.4 65.0 1.0
O A:ASP672 2.4 60.4 1.0
C3 A:GOL902 3.0 63.4 1.0
O A:MET675 3.3 61.4 1.0
O A:TYR669 3.4 68.8 1.0
C A:LYS673 3.5 69.7 1.0
C A:ASP672 3.5 67.4 1.0
CA A:LYS673 3.5 69.4 1.0
O A:LYS673 3.5 79.3 1.0
N A:LYS673 3.9 65.4 1.0
C A:MET675 4.1 47.6 1.0
N A:GLN674 4.1 65.4 1.0
N A:MET675 4.2 54.2 1.0
C2 A:GOL902 4.4 76.3 1.0
C A:TYR669 4.6 68.4 1.0
CA A:ASP672 4.8 74.0 1.0
C A:GLN674 4.8 55.3 1.0
O A:LYS670 4.8 78.3 1.0
CB A:LYS673 4.8 77.8 1.0
CA A:MET675 4.8 48.5 1.0
C1 A:GOL902 4.8 77.5 1.0
CA A:GLN674 4.9 63.0 1.0
N A:SER676 4.9 40.4 1.0

Sodium binding site 2 out of 2 in 9eu5

Go back to Sodium Binding Sites List in 9eu5
Sodium binding site 2 out of 2 in the Ssx Structure of Autotaxin at Room Temperature


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Ssx Structure of Autotaxin at Room Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na930

b:40.7
occ:1.00
O A:ASN801 2.8 38.8 1.0
OG A:SER807 3.1 64.2 1.0
O A:SER804 3.2 50.9 1.0
CA A:ASP802 3.2 52.5 1.0
C A:ASN801 3.4 46.5 1.0
N A:ASP802 3.6 49.2 1.0
OD1 A:ASP802 3.6 48.2 1.0
C A:ASP802 4.0 40.8 1.0
O A:ASP802 4.1 39.9 1.0
C A:SER804 4.3 47.0 1.0
CB A:ASP802 4.3 44.7 1.0
CB A:SER807 4.4 48.1 1.0
CG A:ASP802 4.4 49.3 1.0
CA A:ASN801 4.6 45.4 1.0
CB A:ASN801 4.8 50.1 1.0
CA A:CYS805 4.9 58.2 1.0
N A:SER804 4.9 37.9 1.0
N A:GLU803 5.0 42.7 1.0

Reference:

N.Foos, J.B.Florial, M.Eymery, J.Sinoir, F.Felisaz, M.Oscarsson, A.Beteva, M.W.Bowler, D.Nurizzo, G.Papp, M.Soler-Lopez, M.Nanao, S.Basu, A.A.Mccarthy. In Situ Serial Crystallography Facilitates 96-Well Plate Structural Analysis at Low Symmetry. Iucrj 2024.
ISSN: ESSN 2052-2525
PubMed: 39008358
DOI: 10.1107/S2052252524005785
Page generated: Wed Oct 9 14:30:36 2024

Last articles

Zn in 9FS1
Zn in 9FS3
Zn in 9FS2
Zn in 9H3H
Zn in 9F29
Zn in 9F2A
Zn in 9EY2
Zn in 9F26
Zn in 9E8J
Zn in 9E8N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy