Sodium in PDB 9eo4: Outward-Open Structure of Human Dopamine Transporter Bound to Cocaine

The structure of Outward-Open Structure of Human Dopamine Transporter Bound to Cocaine also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Outward-Open Structure of Human Dopamine Transporter Bound to Cocaine (pdb code 9eo4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Outward-Open Structure of Human Dopamine Transporter Bound to Cocaine, PDB code: 9eo4:

Sodium binding site 1 out of 1 in the Outward-Open Structure of Human Dopamine Transporter Bound to Cocaine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Outward-Open Structure of Human Dopamine Transporter Bound to Cocaine within 5.0Å range: probe atom residue distance (Å) B Occ B:Na705 b:30.0 occ:1.00 OD1 B:ASP421 1.9 57.0 1.0 O B:GLY75 2.0 63.4 1.0 HG B:SER422 2.1 40.5 1.0 OG B:SER422 2.1 43.6 1.0 O B:VAL78 2.2 62.9 1.0 O B:LEU418 2.5 45.7 1.0 H B:SER422 2.8 40.3 1.0 HA B:ASP79 2.9 71.7 1.0 CG B:ASP421 2.9 51.8 1.0 C B:VAL78 3.2 58.7 1.0 C B:GLY75 3.2 51.7 1.0 O B:HOH801 3.2 30.0 1.0 N B:SER422 3.2 40.5 1.0 CB B:SER422 3.3 32.8 1.0 HB3 B:ASP79 3.4 71.9 1.0 OD2 B:ASP421 3.6 42.8 1.0 CA B:ASP79 3.6 67.3 1.0 HA B:PHE76 3.6 56.5 1.0 C B:LEU418 3.7 39.9 1.0 HB2 B:SER422 3.7 39.4 1.0 CA B:SER422 3.7 30.4 1.0 O B:PHE76 3.7 66.4 1.0 N B:ASP79 3.8 66.8 1.0 HA B:SER422 3.8 39.3 1.0 HA B:LEU418 3.8 42.6 1.0 CB B:ASP79 3.9 72.8 1.0 HA2 B:GLY75 3.9 56.2 1.0 HB2 B:ASP79 4.0 72.3 1.0 HB3 B:SER422 4.0 38.4 1.0 CB B:ASP421 4.0 43.2 1.0 C B:ASP421 4.1 42.9 1.0 C B:PHE76 4.1 59.1 1.0 CA B:PHE76 4.1 49.9 1.0 N B:PHE76 4.1 42.0 1.0 HB2 B:ASP421 4.1 45.3 1.0 CA B:GLY75 4.1 42.4 1.0 H B:ASP421 4.3 45.0 1.0 CA B:LEU418 4.3 40.9 1.0 H B:VAL78 4.3 61.6 1.0 CA B:VAL78 4.4 59.1 1.0 N B:VAL78 4.4 54.4 1.0 HD2 B:ASP421 4.4 44.8 1.0 CA B:ASP421 4.5 34.6 1.0 HA3 B:GLY75 4.5 54.2 1.0 HA2 B:GLY419 4.5 42.1 1.0 HB B:VAL78 4.5 62.5 1.0 H B:ASP79 4.6 71.3 1.0 N B:ASP421 4.6 43.2 1.0 HB3 B:LEU418 4.7 42.7 1.0 HD23 B:LEU418 4.7 42.7 1.0 HD22 B:LEU418 4.7 43.2 1.0 N B:GLY419 4.7 40.9 1.0 HH B:TYR156 4.8 68.7 1.0 HG12 B:VAL78 4.8 62.8 1.0 O B:THR417 4.8 52.0 1.0 HB3 B:ASP421 4.8 43.6 1.0 C B:ASP79 4.9 69.3 1.0 H B:PHE76 4.9 54.8 1.0 O B:ASP421 4.9 42.7 1.0 CA B:GLY419 4.9 37.0 1.0 N B:ALA77 5.0 61.5 1.0 CB B:VAL78 5.0 64.0 1.0 C B:ALA77 5.0 59.0 1.0

J.C.Nielsen, K.Salomon, I.E.Kalenderoglou, S.Bargmeyer, T.Pape, A.Shahsavar, C.J.Loland. The Molecular Basis For Cocaine Binding to the Human Dopamine Transporter To Be Published.