Sodium in PDB 9bs5: Bacteroides Ovatus GH97C Sus

The structure of Bacteroides Ovatus GH97C Sus, PDB code: 9bs5 was solved by H.A.Brown, N.M.Koropatkin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	51.26 / 1.46
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	107.855, 116.528, 144.004, 90, 90, 90
R / Rfree (%)	20.4 / 22.4

The structure of Bacteroides Ovatus GH97C Sus also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Sodium atom in the Bacteroides Ovatus GH97C Sus (pdb code 9bs5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Bacteroides Ovatus GH97C Sus, PDB code: 9bs5:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Bacteroides Ovatus GH97C Sus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Bacteroides Ovatus GH97C Sus within 5.0Å range: probe atom residue distance (Å) B Occ A:Na813 b:27.1 occ:1.00 O A:HOH1535 2.0 28.9 1.0 O A:HOH1485 2.2 24.2 1.0 O A:HOH1347 2.2 24.9 1.0 O A:HOH1489 2.2 32.4 1.0 O A:HOH1514 2.2 28.7 1.0 NE2 A:HIS712 2.4 21.2 1.0 CE1 A:HIS712 3.4 21.2 1.0 CD2 A:HIS712 3.5 20.4 1.0 O A:HOH1381 4.0 21.4 1.0 O A:HOH1259 4.1 38.8 1.0 O A:HOH961 4.1 25.2 1.0 OD1 A:ASN715 4.3 19.1 1.0 O A:HOH1157 4.3 31.8 1.0 CA A:ALA714 4.3 16.0 1.0 O A:ALA713 4.5 15.8 1.0 ND1 A:HIS712 4.5 20.6 1.0 CG A:HIS712 4.6 19.9 1.0 O A:HOH1225 4.6 23.2 1.0 N A:ASN715 4.7 14.9 1.0 C A:ALA714 4.9 15.1 1.0 CG A:ASN715 5.0 17.3 1.0

Sodium binding site 2 out of 2 in the Bacteroides Ovatus GH97C Sus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Bacteroides Ovatus GH97C Sus within 5.0Å range: probe atom residue distance (Å) B Occ B:Na810 b:31.3 occ:1.00 O B:HOH1463 2.0 30.6 1.0 O B:HOH1497 2.1 32.3 1.0 O B:HOH1471 2.1 32.6 1.0 O B:HOH1275 2.2 26.0 1.0 O B:HOH1513 2.2 27.0 1.0 NE2 B:HIS712 2.5 24.4 1.0 CE1 B:HIS712 3.4 23.9 1.0 CD2 B:HIS712 3.4 23.5 1.0 O B:HOH968 3.9 28.3 1.0 O B:HOH1234 4.0 40.1 1.0 O B:HOH1282 4.1 28.2 1.0 O B:HOH1344 4.2 38.1 1.0 OD1 B:ASN715 4.2 21.3 1.0 CA B:ALA714 4.3 17.4 1.0 O B:HOH1251 4.6 30.1 1.0 ND1 B:HIS712 4.6 22.6 1.0 O B:ALA713 4.6 18.0 1.0 CG B:HIS712 4.6 21.9 1.0 N B:ASN715 4.7 16.3 1.0 C B:ALA714 4.9 16.5 1.0 CG B:ASN715 5.0 20.9 1.0

H.A.Brown, N.M.Koropatkin. Bacteroides Ovatus GH97C Sus To Be Published.