Sodium in PDB 9avk: Structure of Long Rib Domain From Limosilactobacillus Reuteri

The structure of Structure of Long Rib Domain From Limosilactobacillus Reuteri, PDB code: 9avk was solved by Y.Xue, X.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.80 / 1.46
Space group	P 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	36.161, 36.161, 126.332, 90, 90, 90
R / Rfree (%)	15.4 / 18.3

The binding sites of Sodium atom in the Structure of Long Rib Domain From Limosilactobacillus Reuteri (pdb code 9avk). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Long Rib Domain From Limosilactobacillus Reuteri, PDB code: 9avk:

Sodium binding site 1 out of 1 in the Structure of Long Rib Domain From Limosilactobacillus Reuteri


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Long Rib Domain From Limosilactobacillus Reuteri within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1001 b:13.8 occ:1.00 O A:ALA893 2.3 15.7 1.0 O A:TYR896 2.3 12.6 1.0 O A:HOH1131 2.4 31.4 1.0 OD2 A:ASP976 2.4 12.2 1.0 OD1 A:ASP976 2.4 17.4 1.0 CG A:ASP976 2.7 14.0 1.0 O A:HOH1107 3.4 53.7 1.0 C A:ALA893 3.4 14.8 1.0 C A:TYR896 3.5 11.6 1.0 ND2 A:ASN897 3.7 16.1 1.0 CA A:ALA893 4.0 13.1 1.0 CA A:ASN897 4.2 10.5 1.0 CB A:ASP976 4.2 12.9 1.0 N A:ASN897 4.3 10.3 1.0 CD A:PRO898 4.3 9.3 1.0 CB A:ALA893 4.4 13.4 1.0 CG A:ASN897 4.5 14.0 1.0 N A:GLU894 4.5 14.9 0.5 N A:GLU894 4.5 14.8 0.5 N A:TYR896 4.5 12.2 1.0 OH A:TYR970 4.6 8.6 1.0 O A:HOH1112 4.6 24.1 1.0 CA A:TYR896 4.6 11.7 1.0 O A:GLU894 4.6 16.5 0.5 C A:GLU894 4.7 15.1 0.5 CA A:GLU894 4.8 15.3 0.5 CA A:GLU894 4.8 15.4 0.5 O A:HOH1122 4.8 19.9 1.0 CB A:ASN897 4.9 11.5 1.0 C A:GLU894 4.9 15.2 0.5

Y.Xue, X.Kang. Crystal Structure of Rib Long Domain From Cell Surface Adhesin of Limosilactobacillus Reuteri To Be Published.