Chemical elements
  Sodium
    Isotopes
    Energy
    Preparation
    Applications
    Physical Properties
    Chemical Properties
    PDB 131d-1bli
    PDB 1bph-1d10
    PDB 1d11-1ej2
    PDB 1eja-1gb5
    PDB 1gb6-1goh
    PDB 1gq2-1ikp
    PDB 1ikq-1jz1
    PDB 1jz2-1kvs
    PDB 1kvt-1me8
    PDB 1mg2-1nsz
    PDB 1nta-1oyt
    PDB 1p0s-1qjs
    PDB 1qnj-1s5d
    PDB 1s5e-1tjp
    PDB 1tk6-1uxt
    PDB 1uxu-1vzq
    PDB 1w15-1xc6
    PDB 1xcu-1yf1
    PDB 1ygg-1zko
    PDB 1zkp-2afh
      1zkp
      1zl0
      1zm8
      1znb
      1zob
      1zod
      1zoh
      1zor
      1zpk
      1zqg
      1zqh
      1zqo
      1zqq
      1zqr
      1zqs
      1zqt
      1zud
      1zum
      1zun
      1zv8
      1zvd
      231d
      244d
      246d
      258d
      284d
      292d
      293d
      2a1d
      2a1e
      2a2a
      2a2c
      2a2q
      2a31
      2a32
      2a5d
      2a5f
      2a5g
      2a65
      2a7d
      2a7f
      2a7l
      2a83
      2a9y
      2a9z
      2aa0
      2ab8
      2abs
      2aer
      2afh
    PDB 2agv-2bhc
    PDB 2bhp-2cc6
    PDB 2cc7-2dec
    PDB 2deg-2ein
    PDB 2eit-2fjb
    PDB 2fld-2gg8
    PDB 2gg9-2h9j
    PDB 2h9k-2ien
    PDB 2ieo-2jih
    PDB 2jin-2omd
    PDB 2omg-2p77
    PDB 2p78-2q68
    PDB 2q69-2qz7
    PDB 2qzi-2v35
    PDB 2v3h-2vwo
    PDB 2vx4-2wig
    PDB 2wij-2x1z
    PDB 2x20-2xmk
    PDB 2xmm-2zfq
    PDB 2zfr-3a6s
    PDB 3a6t-3b1e
    PDB 3b2n-3bos
    PDB 3bov-3ccr
    PDB 3ccs-3d7r
    PDB 3d97-3e3y
    PDB 3e40-3erp
    PDB 3euw-3fgw
    PDB 3fh4-3g3r
    PDB 3g3s-3gxw
    PDB 3gyz-3hwt
    PDB 3hww-3ijp
    PDB 3imm-3k0g
    PDB 3k13-3l7x
    PDB 3l88-3max
    PDB 3mbb-3mr1
    PDB 3mty-3nu3
    PDB 3nu4-3ot1
    PDB 3ow2-3qwc
    PDB 3qx5-3tfr
    PDB 3tfs-3v6o
    PDB 3v72-4ag2
    PDB 4aga-4eae
    PDB 4ecn-4g8t
    PDB 4gdt-8icw
    PDB 8icx-9icy

Sodium in PDB, part 20 (951-1000), PDB files 1zkp - 2afh






Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms.
PDB files 951-1000 (1zkp - 2afh):
  1. 1zkp - 1.5A Resolution Crystal Structure Of A Metallo Beta Lactamase Family Protein, the Elac Homolgue of Bacillus Anthracis, A Putative Ribonuclease
  2. 1zl0 - Structure Of Protein of Unknown Function PA5198 From Pseudomonas Aeruginosa
  3. 1zm8 - Apo Crystal Structure of Nuclease A From Anabaena Sp.
  4. 1znb - Metallo-Beta-Lactamase
  5. 1zob - Crystal Structure of Dialkylglycine Decarboxylases Bound With Calcium Ion
  6. 1zod - Crystal Structure of Dialkylglycine Decarboxylase Bound With Cesium Ion
  7. 1zoh - Crystal Structure of Protein Kinase CK2 in Complex With Tbb- Derivatives Inhibitors
  8. 1zor - Isocitrate Dehydrogenase From the Hyperthermophile Thermotoga Maritima
  9. 1zpk - Crystal Structure Of the Complex of Mutant Hiv-1 Protease (A71V, V82T, I84V) With A Hydroxyethylamine Peptidomimetic Inhibitor Boc-Phe- Psi[R-Ch(Oh)CH2NH]-Phe-Glu-Phe-NH2
  10. 1zqg - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of A Sodium-Free Artificial Mother Liquor At pH 6.5
  11. 1zqh - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of A Sodium-Free Artificial Mother Liquor At pH 7.5
  12. 1zqo - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of CACL2 (15 Millimolar) and Nacl (15 Millimolar)
  13. 1zqq - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of MNCL2 (15 Millimolar) and Nacl (15 Millimolar)
  14. 1zqr - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of NICL2
  15. 1zqs - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Tlcl (0.5 Millimolar)
  16. 1zqt - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed With Seven Base Pairs Of Dna; Soaked in the Presence of Datp (0.01 Millimolar) and ZNCL2 (0.02 Millimolar)
  17. 1zud - Structure of This-Thif Protein Complex
  18. 1zum - Human Mitochondrial Aldehyde Dehydrogenase Asian Variant, ALDH2*2, Apo Form
  19. 1zun - Crystal Structure of A Gtp-Regulated Atp Sulfurylase Heterodimer From Pseudomonas Syringae
  20. 1zv8 - A Structure-Based Mechanism of Sars Virus Membrane Fusion
  21. 1zvd - Regulation of SMURF2 Ubiquitin Ligase Activity By Anchoring The E2 to the Hect Domain
  22. 231d - Structure of A Dna-Porphyrin Complex
  23. 244d - The High-Resolution Crystal Structure of A Parallel- Stranded Guanine Tetraplex
  24. 246d - Structure of the Purine-Pyrimidine Alternating Rna Double Helix, R(Guauaua)D(C) , With A 3'-Terminal Deoxy Residue
  25. 258d - Factors Affecting Sequence Selectivity on Nogalamycin Intercalation: the Crystal Structure of D(Tgtaca)- Nogalamycin
  26. 284d - The Bi-Loop, A New General Four-Stranded Dna Motif
  27. 292d - Interaction Between The Left-Handed Z-Dna And Polyamine:The Crystal Structure of the D(Cg)3 and N-(2-Aminoethyl)-1,4- Diaminobutane Complex
  28. 293d - Interaction Between The Left-Handed Z-Dna And Polyamine-2: The Crystal Structure of the D(Cg)3 and Spermidine Complex
  29. 2a1d - Staphylocoagulase Bound to Bovine Thrombin
  30. 2a1e - High Resolution Structure of Hiv-1 Pr With Ts-126
  31. 2a2a - High-Resolution Crystallographic Analysis Of the Autoinhibited Conformation of A Human Death-Associated Protein Kinase
  32. 2a2c - X-Ray Structure of Human N-Acetyl Galactosamine Kinase Complexed With Mg-Adp and N-Acetyl Galactosamine 1- Phosphate
  33. 2a2q - Complex Of Active-Site Inhibited Human Coagulation Factor Viia With Human Soluble Tissue Factor in the Presence of CA2+, MG2+, Na+, and ZN2+
  34. 2a31 - Trypsin in Complex With Borate
  35. 2a32 - Trypsin in Complex With Benzene Boronic Acid
  36. 2a5d - Structural Basis For the Activation of Cholera Toxin By Human ARF6-Gtp
  37. 2a5f - Cholera Toxin A1 Subunit Bound to Its Substrate, Nad+, and Its Human Protein Activator, ARF6
  38. 2a5g - Cholera Toxin A1 Subunit Bound to ARF6(Q67L)
  39. 2a65 - Crystal Structure Of Leutaa, A Bacterial Homolog of Na+/Cl--Dependent Neurotransmitter Transporters
  40. 2a7d - On The Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- the Optimal Data Collection Wavelength
  41. 2a7f - On The Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- the Optimal Data Collection Wavelength
  42. 2a7l - Structure of the Human Hypothetical Ubiquitin-Conjugating Enzyme, LOC55284
  43. 2a83 - Crystal Structure of Hla-B*2705 Complexed With the Glucagon Receptor (Gr) Peptide (Residues 412-420)
  44. 2a9y - Crystal Structure of T. Gondii Adenosine Kinase Complexed With N6-Dimethyladenosine
  45. 2a9z - Crystal Structure of T. Gondii Adenosine Kinase Complexed With N6-Dimethyladenosine and Amp-Pcp
  46. 2aa0 - Crystal Structure of T. Gondii Adenosine Kinase Complexed With 6-Methylmercaptopurine Riboside
  47. 2ab8 - Crystal Structure of T. Gondii Adenosine Kinase Complexed With 6-Methylmercaptopurine Riboside and Amp-Pcp
  48. 2abs - Crystal Structure of T. Gondii Adenosine Kinase Complexed With Amp-Pcp
  49. 2aer - Crystal Structure of Benzamidine-Factor Viia/Soluble Tissue Factor Complex.
  50. 2afh - Crystal Structure of Nucleotide-Free AV2-AV1 Complex


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Sodium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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