Sodium in PDB 8zyz: Bacterial Flagellar Sodium-Driven Stator POMA5POMB2(D24N) with 100 Mm Nacl

The binding sites of Sodium atom in the Bacterial Flagellar Sodium-Driven Stator POMA5POMB2(D24N) with 100 Mm Nacl (pdb code 8zyz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Bacterial Flagellar Sodium-Driven Stator POMA5POMB2(D24N) with 100 Mm Nacl, PDB code: 8zyz:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Bacterial Flagellar Sodium-Driven Stator POMA5POMB2(D24N) with 100 Mm Nacl


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Bacterial Flagellar Sodium-Driven Stator POMA5POMB2(D24N) with 100 Mm Nacl within 5.0Å range: probe atom residue distance (Å) B Occ C:Na501 b:24.1 occ:1.00 CB A:PHE32 3.7 19.9 1.0 CE C:MET165 3.9 23.2 1.0 CA A:PHE32 4.0 20.3 1.0 CD2 C:LEU162 4.0 11.0 1.0 CD1 C:LEU162 4.0 11.5 1.0 CD2 A:PHE32 4.1 30.4 1.0 CD1 C:LEU166 4.2 22.8 1.0 CD2 C:LEU166 4.3 21.2 1.0 CG A:PHE32 4.3 30.1 1.0 CG C:LEU166 4.3 22.3 1.0 CG C:LEU162 4.4 12.4 1.0 N A:PHE32 4.5 26.3 1.0 CB C:LEU162 4.6 8.6 1.0 CD1 G:LEU183 4.6 13.2 1.0 CE G:MET179 4.7 17.0 1.0 CD2 A:LEU35 4.7 30.2 1.0 CE C:MET179 4.7 21.5 1.0 SD G:MET179 4.9 41.2 1.0 O A:LEU28 5.0 25.3 1.0

Sodium binding site 2 out of 2 in the Bacterial Flagellar Sodium-Driven Stator POMA5POMB2(D24N) with 100 Mm Nacl


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Bacterial Flagellar Sodium-Driven Stator POMA5POMB2(D24N) with 100 Mm Nacl within 5.0Å range: probe atom residue distance (Å) B Occ G:Na301 b:28.5 occ:1.00 CD2 G:LEU183 2.8 17.0 1.0 CA A:LEU28 3.7 15.2 1.0 CB A:LEU28 4.0 16.1 1.0 SG A:CYS31 4.2 35.7 1.0 OG1 G:THR186 4.2 13.8 1.0 CG G:LEU183 4.2 11.6 1.0 CG A:LEU28 4.2 26.1 1.0 CA G:LEU183 4.4 2.2 1.0 CB A:CYS31 4.5 12.8 1.0 OG1 G:THR158 4.5 19.0 1.0 N A:LEU28 4.5 17.8 1.0 CD2 C:LEU159 4.5 6.1 1.0 CD1 A:LEU28 4.6 26.4 1.0 O A:HOH401 4.6 23.2 1.0 O A:LEU28 4.7 25.3 1.0 N G:LEU183 4.7 13.3 1.0 C A:LEU28 4.7 19.1 1.0 CB G:THR186 4.7 4.3 1.0 O G:ALA182 4.7 10.3 1.0 C G:ALA182 4.8 10.2 1.0 CB G:LEU183 4.8 5.5 1.0 O A:SER27 4.9 20.1 1.0 CG2 G:THR158 5.0 5.4 1.0

T.Nishikino, N.Takekawa, J.Kishikawa, M.Hirose, S.Kojima, M.Homma, T.Kato, K.Imada. Structural Insight Into Sodium Ion Pathway in the Bacterial Flagellar Stator From Marine Vibrio Proc.Natl.Acad.Sci.Usa.
ISSN: ESSN 1091-6490
DOI: DOI.ORG/10.1073/PNAS.2415713122