Sodium in PDB 8zqo: Human High-Affinity Choline Transporter CHT1 Bound to Hc-3 Under Nacl Condition, with Sodium and Chloride Ions Coordinated.

The structure of Human High-Affinity Choline Transporter CHT1 Bound to Hc-3 Under Nacl Condition, with Sodium and Chloride Ions Coordinated. also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Human High-Affinity Choline Transporter CHT1 Bound to Hc-3 Under Nacl Condition, with Sodium and Chloride Ions Coordinated. (pdb code 8zqo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Human High-Affinity Choline Transporter CHT1 Bound to Hc-3 Under Nacl Condition, with Sodium and Chloride Ions Coordinated., PDB code: 8zqo:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Human High-Affinity Choline Transporter CHT1 Bound to Hc-3 Under Nacl Condition, with Sodium and Chloride Ions Coordinated.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Human High-Affinity Choline Transporter CHT1 Bound to Hc-3 Under Nacl Condition, with Sodium and Chloride Ions Coordinated. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na601 b:30.0 occ:1.00 OG A:SER346 2.2 23.8 1.0 O A:VAL63 2.2 30.2 1.0 O A:ALA60 2.3 15.3 1.0 O A:ALA343 2.7 19.0 1.0 OG A:SER347 3.0 10.2 1.0 C A:VAL63 3.1 19.9 1.0 CB A:SER346 3.4 19.1 1.0 C A:ALA60 3.5 16.7 1.0 N A:SER347 3.6 7.2 1.0 C A:ALA343 3.7 14.4 1.0 CA A:GLY64 3.7 13.1 1.0 N A:GLY64 3.7 22.3 1.0 C A:SER346 3.8 10.5 1.0 CA A:ALA343 3.9 7.2 1.0 CB A:SER347 4.0 17.6 1.0 CA A:SER346 4.0 8.2 1.0 CA A:VAL63 4.1 11.2 1.0 O A:THR61 4.1 21.9 1.0 N A:VAL63 4.2 24.5 1.0 CA A:SER347 4.3 11.8 1.0 O A:SER346 4.3 15.0 1.0 CA A:ALA60 4.3 10.9 1.0 C A:THR61 4.4 19.5 1.0 N A:SER346 4.5 22.1 1.0 N A:THR61 4.5 19.9 1.0 CB A:VAL63 4.5 14.8 1.0 CA A:THR61 4.6 16.7 1.0 CB A:ALA343 4.6 14.3 1.0 O A:ALA342 4.6 18.1 1.0 CD1 A:ILE195 4.7 19.2 1.0 C A:TRP62 4.9 20.9 1.0 N A:VAL344 4.9 20.3 1.0 CB A:ALA60 4.9 12.7 1.0 CG1 A:VAL63 5.0 10.2 1.0 C A:GLY64 5.0 18.9 1.0

Sodium binding site 2 out of 2 in the Human High-Affinity Choline Transporter CHT1 Bound to Hc-3 Under Nacl Condition, with Sodium and Chloride Ions Coordinated.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Human High-Affinity Choline Transporter CHT1 Bound to Hc-3 Under Nacl Condition, with Sodium and Chloride Ions Coordinated. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na602 b:30.0 occ:1.00 OD2 A:ASP188 2.2 20.9 1.0 OG A:SER350 2.2 18.9 1.0 O A:SER346 2.5 15.0 1.0 OD1 A:ASP188 2.7 32.4 1.0 CG A:ASP188 2.7 22.9 1.0 OD1 A:ASP349 2.9 22.3 1.0 NH2 A:ARG260 3.3 27.6 1.0 C A:SER346 3.5 10.5 1.0 CG1 A:VAL184 3.6 16.1 1.0 OG1 A:THR61 3.6 22.1 1.0 CB A:SER350 3.6 18.7 1.0 CG A:ASP349 3.7 18.8 1.0 OD2 A:ASP349 3.8 23.7 1.0 CA A:SER346 4.0 8.2 1.0 CB A:ASP188 4.2 5.4 1.0 N A:SER350 4.2 13.9 1.0 CA A:SER350 4.3 7.8 1.0 CA A:THR61 4.4 16.7 1.0 CB A:SER346 4.5 19.1 1.0 CB A:THR61 4.5 19.3 1.0 O A:VAL184 4.5 26.9 1.0 N A:THR61 4.6 19.9 1.0 OG1 A:THR57 4.6 28.2 1.0 CZ A:ARG260 4.6 29.7 1.0 N A:SER347 4.7 7.2 1.0 O A:THR57 4.8 27.4 1.0 CG2 A:THR61 4.8 10.3 1.0 CB A:VAL184 5.0 16.2 1.0

Y.Qiu, Y.Gao. Ion Coupling and Inhibitory Mechanisms of the Human Presynaptic High-Affinity Choline Transporter CHT1 Structure 2024.
ISSN: ISSN 0969-2126
DOI: 10.1016/J.STR.2024.11.009