Sodium in PDB 8zj7: Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 3,4-Dihydroxybenzoate and Nad.

Enzymatic activity of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 3,4-Dihydroxybenzoate and Nad.

All present enzymatic activity of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 3,4-Dihydroxybenzoate and Nad.:
1.1.1.262;

Protein crystallography data

The structure of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 3,4-Dihydroxybenzoate and Nad., PDB code: 8zj7 was solved by K.A.Kumar, D.Pahwa, P.Kumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.00 / 2.65
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 87.303, 98.148, 168.036, 90, 90, 90
R / Rfree (%) 18.1 / 25.2

Other elements in 8zj7:

The structure of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 3,4-Dihydroxybenzoate and Nad. also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Zinc (Zn) 4 atoms
Magnesium (Mg) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 3,4-Dihydroxybenzoate and Nad. (pdb code 8zj7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 3,4-Dihydroxybenzoate and Nad., PDB code: 8zj7:

Sodium binding site 1 out of 1 in 8zj7

Go back to Sodium Binding Sites List in 8zj7
Sodium binding site 1 out of 1 in the Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 3,4-Dihydroxybenzoate and Nad.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 3,4-Dihydroxybenzoate and Nad. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na404

b:51.1
occ:1.00
 HD1 D:HIS118 2.6 51.4 0.0
HG1 D:THR115 3.3 42.6 0.0
ND1 D:HIS118 3.4 69.7 1.0
HA D:THR115 3.6 45.5 1.0
HB2 D:HIS118 4.0 53.4 1.0
OG1 D:THR115 4.1 46.0 1.0
HG22 D:THR115 4.3 51.0 1.0
CE1 D:HIS118 4.4 63.5 1.0
CG D:HIS118 4.4 60.8 1.0
HE1 D:HIS118 4.4 63.2 1.0
CA D:THR115 4.4 45.1 1.0
CB D:HIS118 4.5 53.5 1.0
HB3 D:HIS118 4.5 53.4 1.0
HB3 D:GLU114 4.6 55.7 1.0
CB D:THR115 4.8 48.0 1.0
N D:THR115 4.9 44.0 1.0
O D:GLU114 5.0 46.9 1.0

Reference:

K.A.Kumar, D.Pahwa. Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with 3,4-Dihydroxybenzoate and Nad. To Be Published.
Page generated: Wed Oct 9 14:27:29 2024

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