Sodium in PDB 8zhy: Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2.

Enzymatic activity of Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2.

All present enzymatic activity of Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2.:
1.1.1.262;

Protein crystallography data

The structure of Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2., PDB code: 8zhy was solved by K.A.Kumar, D.Pahwa, P.Kumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.70
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 86.729, 93.776, 166.309, 90, 90, 90
R / Rfree (%) 28.3 / 33

Other elements in 8zhy:

The structure of Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2. also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Zinc (Zn) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2. (pdb code 8zhy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2., PDB code: 8zhy:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 8zhy

Go back to Sodium Binding Sites List in 8zhy
Sodium binding site 1 out of 2 in the Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na405

b:30.0
occ:1.00
H A:TYR127 2.6 29.4 1.0
HD2 A:TYR127 3.2 27.2 1.0
HA2 A:GLY126 3.3 32.8 1.0
HA3 A:GLY126 3.3 32.8 1.0
N A:TYR127 3.5 29.4 1.0
O A:HOH541 3.6 30.0 1.0
HD2 A:PRO128 3.6 26.1 1.0
HB2 A:TYR127 3.6 28.0 1.0
HD3 A:PRO128 3.7 26.1 1.0
CA A:GLY126 3.7 32.8 1.0
CD2 A:TYR127 3.9 27.2 1.0
CD A:PRO128 4.1 26.1 1.0
C A:GLY126 4.2 30.7 1.0
CB A:TYR127 4.3 28.0 1.0
HE1 A:HIS112 4.4 19.4 1.0
CG A:TYR127 4.5 27.2 1.0
CA A:TYR127 4.5 28.5 1.0
HE2 A:TYR127 4.8 27.6 1.0
CE2 A:TYR127 4.8 27.6 1.0
HE1 A:HIS159 4.9 16.7 1.0
HZ A:PHE124 4.9 31.9 1.0

Sodium binding site 2 out of 2 in 8zhy

Go back to Sodium Binding Sites List in 8zhy
Sodium binding site 2 out of 2 in the Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Magnesium Substituted Terephthalate 1,2-Cis- Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na403

b:30.0
occ:1.00
HG D:SER170 1.8 18.8 0.0
OG D:SER170 2.4 18.8 1.0
HB3 D:GLN172 3.1 21.0 1.0
HB2 D:LEU173 3.3 21.9 1.0
CB D:SER170 3.7 18.3 1.0
H D:LEU173 3.8 21.5 1.0
HB3 D:SER170 3.9 18.3 1.0
HB2 D:SER170 4.0 18.3 1.0
CB D:GLN172 4.0 21.0 1.0
N D:LEU173 4.2 21.5 1.0
HD13 D:LEU173 4.2 21.8 1.0
CB D:LEU173 4.3 21.9 1.0
HB2 D:GLN172 4.4 21.0 1.0
HG2 D:GLN172 4.5 21.6 1.0
HG3 D:GLN172 4.5 21.6 1.0
H D:GLN172 4.6 20.1 1.0
HA D:LEU173 4.6 21.8 1.0
CG D:GLN172 4.6 21.6 1.0
CA D:LEU173 4.7 21.8 1.0
O D:ARG168 4.7 19.6 1.0
HB3 D:LEU173 4.8 21.9 1.0
C D:GLN172 4.8 20.6 1.0
CA D:SER170 4.9 18.1 1.0
CA D:GLN172 4.9 20.4 1.0
CD1 D:LEU173 5.0 21.8 1.0
HD22 D:LEU173 5.0 21.8 1.0

Reference:

K.A.Kumar, D.Pahwa. Magnesium Substituted Terephthalate 1,2-Cis-Dihydrodioldehydrogenase/Decarboxylase in Complex with CO2. To Be Published.
Page generated: Wed Oct 9 14:27:00 2024

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