Sodium in PDB 8z76: The Structure of Thiocyanate Dehydrogenase From Pelomicrobium Methylotrophicum (Pmtcdh), Activated By Crystals Soaking with 1 Mm CUCL2 During 6 Months

The structure of The Structure of Thiocyanate Dehydrogenase From Pelomicrobium Methylotrophicum (Pmtcdh), Activated By Crystals Soaking with 1 Mm CUCL2 During 6 Months, PDB code: 8z76 was solved by L.A.Varfolomeeva, A.Y.Solovieva, N.S.Shipkov, N.I.Dergousova, K.M.Boyko, T.V.Tikhonova, V.O.Popov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.79 / 1.80
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	97.8, 101.75, 276.35, 90, 90, 90
R / Rfree (%)	16.8 / 21.7

The structure of The Structure of Thiocyanate Dehydrogenase From Pelomicrobium Methylotrophicum (Pmtcdh), Activated By Crystals Soaking with 1 Mm CUCL2 During 6 Months also contains other interesting chemical elements:

Copper

(Cu)

13 atoms

The binding sites of Sodium atom in the The Structure of Thiocyanate Dehydrogenase From Pelomicrobium Methylotrophicum (Pmtcdh), Activated By Crystals Soaking with 1 Mm CUCL2 During 6 Months (pdb code 8z76). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Structure of Thiocyanate Dehydrogenase From Pelomicrobium Methylotrophicum (Pmtcdh), Activated By Crystals Soaking with 1 Mm CUCL2 During 6 Months, PDB code: 8z76:

Sodium binding site 1 out of 1 in the The Structure of Thiocyanate Dehydrogenase From Pelomicrobium Methylotrophicum (Pmtcdh), Activated By Crystals Soaking with 1 Mm CUCL2 During 6 Months


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Structure of Thiocyanate Dehydrogenase From Pelomicrobium Methylotrophicum (Pmtcdh), Activated By Crystals Soaking with 1 Mm CUCL2 During 6 Months within 5.0Å range: probe atom residue distance (Å) B Occ A:Na607 b:25.8 occ:0.50 O A:HOH813 1.9 29.1 0.5 OD1 A:ASP307 2.0 51.2 1.0 CG A:ASP307 3.0 44.8 1.0 CG A:GLU309 3.2 41.3 1.0 OD2 A:ASP307 3.2 46.9 1.0 CD A:GLU309 3.4 45.6 1.0 CB A:GLU309 3.4 34.3 1.0 OE1 A:GLU309 3.5 55.2 1.0 OE2 A:GLU309 4.1 37.9 1.0 CB A:ASP307 4.3 39.7 1.0 OD2 A:ASP304 4.5 30.8 1.0 CA A:GLU309 4.7 29.6 1.0 N A:GLU309 4.9 27.0 1.0

L.A.Varfolomeeva, A.Y.Solovieva, N.S.Shipkov, N.I.Dergousova, K.M.Boyko, T.V.Tikhonova, V.O.Popov. The Structure of Thiocyanate Dehydrogenase From Pelomicrobium Methylotrophicum (Pmtcdh), Activated By Crystals Soaking with 1 Mm CUCL2 To Be Published.