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Sodium in PDB 8z2y: High-Resolution Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Glucose

Enzymatic activity of High-Resolution Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Glucose

All present enzymatic activity of High-Resolution Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Glucose:
3.2.1.58;

Protein crystallography data

The structure of High-Resolution Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Glucose, PDB code: 8z2y was solved by B.Banerjee, C.K.Kamale, A.B.Suryawanshi, P.Bhaumik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.53 / 1.20
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 81.29, 81.29, 114.74, 90, 90, 120
R / Rfree (%) 16.1 / 18.5

Other elements in 8z2y:

The structure of High-Resolution Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Glucose also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the High-Resolution Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Glucose (pdb code 8z2y). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the High-Resolution Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Glucose, PDB code: 8z2y:

Sodium binding site 1 out of 1 in 8z2y

Go back to Sodium Binding Sites List in 8z2y
Sodium binding site 1 out of 1 in the High-Resolution Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Glucose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of High-Resolution Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na507

b:31.4
occ:1.00
 O A:CYS306 2.7 7.5 1.0
O A:HOH1014 2.8 10.4 1.0
O A:HOH1054 3.0 23.8 1.0
HB2 A:ALA336 3.0 8.2 1.0
HB1 A:ALA336 3.1 8.2 1.0
O A:HOH916 3.2 37.5 1.0
HA A:LYS308 3.4 7.9 1.0
HB3 A:CYS332 3.5 10.5 1.0
CB A:ALA336 3.5 8.3 1.0
C A:CYS306 3.8 6.7 1.0
O A:HOH706 3.9 8.7 1.0
HA A:CYS306 3.9 7.1 1.0
O A:HOH897 4.0 9.5 1.0
HB2 A:CYS332 4.1 10.5 1.0
HA A:ALA336 4.1 7.9 1.0
CB A:CYS332 4.2 10.7 1.0
HB3 A:ALA336 4.2 8.2 1.0
HB3 A:CYS306 4.3 7.8 1.0
CA A:LYS308 4.3 7.9 1.0
O A:HOH1095 4.3 26.5 1.0
N A:LYS308 4.3 7.7 1.0
HB2 A:ALA317 4.3 8.2 1.0
C A:ALA307 4.4 7.3 1.0
CA A:CYS306 4.4 7.2 1.0
CA A:ALA336 4.4 8.0 1.0
O A:ALA307 4.5 7.5 1.0
HB2 A:LYS308 4.6 8.5 1.0
H A:LYS308 4.7 7.6 1.0
H A:TYR309 4.7 7.6 1.0
O A:HOH1107 4.8 62.6 1.0
O A:HOH1088 4.8 35.2 1.0
SG A:CYS332 4.8 10.2 1.0
CB A:CYS306 4.9 7.9 1.0
N A:ALA307 4.9 6.9 1.0
O A:CYS332 5.0 13.6 1.0
HG3 A:LYS308 5.0 10.0 1.0
CB A:LYS308 5.0 8.6 1.0

Reference:

B.Banerjee, C.K.Kamale, A.B.Suryawanshi, S.Dasgupta, S.Noronha, P.Bhaumik. Crystal Structures of Aspergillus Oryzae Exo-Beta-(1,3)-Glucanase Reveal Insights Into Oligosaccharide Binding, Recognition, and Hydrolysis. Febs Lett. 2024.
ISSN: ISSN 0014-5793
PubMed: 39448541
DOI: 10.1002/1873-3468.15045
Page generated: Wed Nov 13 13:10:36 2024

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