Sodium in PDB 8z2x: Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Cellobiose

Enzymatic activity of Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Cellobiose

All present enzymatic activity of Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Cellobiose:
3.2.1.58;

Protein crystallography data

The structure of Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Cellobiose, PDB code: 8z2x was solved by B.Banerjee, C.K.Kamale, A.B.Suryawanshi, P.Bhaumik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.03 / 1.73
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 80.89, 80.89, 113.69, 90, 90, 120
R / Rfree (%) 13.7 / 15.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Cellobiose (pdb code 8z2x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Cellobiose, PDB code: 8z2x:

Sodium binding site 1 out of 1 in 8z2x

Go back to Sodium Binding Sites List in 8z2x
Sodium binding site 1 out of 1 in the Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Cellobiose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Exo-Beta-(1,3)-Glucanase From Aspergillus Oryzae (Aobgl) As A Complex with Cellobiose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na503

b:18.1
occ:1.00
 O A:VAL191 2.3 12.1 1.0
O A:LEU186 2.4 16.8 1.0
O A:HOH609 2.4 20.1 1.0
OG1 A:THR229 2.4 15.5 1.0
O A:SER188 2.5 14.3 1.0
OD1 A:ASN226 3.3 17.1 0.5
C A:LEU186 3.4 15.6 1.0
C A:VAL191 3.5 11.9 1.0
C A:SER188 3.6 16.2 1.0
CB A:THR229 3.7 13.7 1.0
OD1 A:ASN226 3.7 19.0 0.5
CA A:LEU186 3.9 16.0 1.0
CG2 A:THR229 4.0 13.8 1.0
CG A:ASN226 4.1 16.8 0.5
CB A:VAL191 4.1 11.8 1.0
CA A:VAL191 4.2 11.5 1.0
CG A:ASN226 4.2 16.9 0.5
CA A:ASP189 4.2 16.4 1.0
N A:ASP189 4.3 14.5 1.0
N A:SER188 4.3 15.8 1.0
CA A:THR229 4.4 13.3 1.0
N A:VAL191 4.5 11.8 1.0
N A:ALA192 4.5 11.2 1.0
N A:GLY187 4.5 15.5 1.0
ND2 A:ASN226 4.5 17.0 0.5
CA A:SER188 4.6 16.5 1.0
CG1 A:VAL191 4.6 12.7 1.0
O A:TYR185 4.6 14.5 1.0
CB A:LEU186 4.6 17.0 1.0
C A:GLY187 4.7 18.5 1.0
CA A:ALA192 4.7 11.7 1.0
C A:ASP189 4.7 14.9 1.0
CB A:ASN226 4.8 16.6 0.5
CB A:ASN226 4.8 16.6 0.5
N A:THR229 4.8 13.0 1.0
CA A:GLY187 4.9 18.1 1.0
O A:ASP189 4.9 16.0 1.0

Reference:

B.Banerjee, C.K.Kamale, A.B.Suryawanshi, S.Dasgupta, S.Noronha, P.Bhaumik. Crystal Structures of Aspergillus Oryzae Exo-Beta-(1,3)-Glucanase Reveal Insights Into Oligosaccharide Binding, Recognition, and Hydrolysis. Febs Lett. 2024.
ISSN: ISSN 0014-5793
PubMed: 39448541
DOI: 10.1002/1873-3468.15045
Page generated: Wed Nov 13 13:10:36 2024

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