Sodium in PDB 8ysv: Crystal Structure of Beta - Glucosidase 6PG From Enterococcus Faecalis

The structure of Crystal Structure of Beta - Glucosidase 6PG From Enterococcus Faecalis, PDB code: 8ysv was solved by W.Y.Wang, Y.J.Li, Z.Y.Liu, X.D.Han, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.28 / 1.79
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	98.11, 79, 58.08, 90, 106.03, 90
R / Rfree (%)	18.7 / 23

The structure of Crystal Structure of Beta - Glucosidase 6PG From Enterococcus Faecalis also contains other interesting chemical elements:

Nickel

(Ni)

1 atom

The binding sites of Sodium atom in the Crystal Structure of Beta - Glucosidase 6PG From Enterococcus Faecalis (pdb code 8ysv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Beta - Glucosidase 6PG From Enterococcus Faecalis, PDB code: 8ysv:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Beta - Glucosidase 6PG From Enterococcus Faecalis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Beta - Glucosidase 6PG From Enterococcus Faecalis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na506 b:36.3 occ:1.00 NE2 A:HIS41 2.3 34.5 1.0 CE1 A:HIS41 3.2 37.7 1.0 CD2 A:HIS41 3.3 30.4 1.0 ND1 A:HIS41 4.3 40.0 1.0 CG A:HIS41 4.4 30.8 1.0 O A:TRP346 4.5 23.2 1.0 C A:TRP346 4.9 27.1 1.0 CA A:GLY347 5.0 30.1 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Beta - Glucosidase 6PG From Enterococcus Faecalis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Beta - Glucosidase 6PG From Enterococcus Faecalis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na507 b:48.7 occ:1.00 OH A:TYR340 2.7 35.2 1.0 O A:HOH780 3.0 31.9 1.0 CZ A:TYR340 3.6 37.1 1.0 CE2 A:TYR340 3.8 31.3 1.0 CE2 A:TYR246 4.4 35.4 1.0 OH A:TYR246 4.6 39.6 1.0 CG A:PRO339 4.7 32.7 1.0 CZ A:TYR246 4.8 37.0 1.0 CE1 A:TYR340 4.8 35.2 1.0

W.Y.Wang, Y.J.Li, Z.Y.Liu, X.D.Han. Crystal Structure of Beta - Glucosidase 6PG From Enterococcus Faecalis To Be Published.