Sodium in PDB 8yja: Structure of Vibrio Vulnificus Martx Cysteine Protease Domain Lacking Beta-Flap

The structure of Structure of Vibrio Vulnificus Martx Cysteine Protease Domain Lacking Beta-Flap, PDB code: 8yja was solved by L.Chen, H.Khan, L.Tan, X.Li, G.Zhang, Y.J.Im, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.40 / 2.20
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	77.321, 77.321, 118.816, 90, 90, 90
R / Rfree (%)	20.7 / 27.7

The binding sites of Sodium atom in the Structure of Vibrio Vulnificus Martx Cysteine Protease Domain Lacking Beta-Flap (pdb code 8yja). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Vibrio Vulnificus Martx Cysteine Protease Domain Lacking Beta-Flap, PDB code: 8yja:

Sodium binding site 1 out of 1 in the Structure of Vibrio Vulnificus Martx Cysteine Protease Domain Lacking Beta-Flap


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Vibrio Vulnificus Martx Cysteine Protease Domain Lacking Beta-Flap within 5.0Å range: probe atom residue distance (Å) B Occ A:Na3801 b:52.6 occ:1.00 O22 A:IHP3802 2.3 61.1 1.0 O21 A:IHP3802 2.5 61.9 1.0 CE1 A:HIS3642 3.1 47.7 1.0 NH2 A:ARG3672 3.1 42.9 1.0 O11 A:IHP3802 3.2 60.2 1.0 P1 A:IHP3802 3.4 68.6 1.0 P2 A:IHP3802 3.5 76.9 1.0 NE2 A:HIS3642 3.7 52.3 1.0 O A:HOH3912 3.8 39.6 1.0 O32 A:IHP3802 3.8 66.6 1.0 NH1 A:ARG3672 3.9 47.6 1.0 CZ A:ARG3672 4.0 42.4 1.0 O12 A:IHP3802 4.0 67.5 1.0 OG A:SER3615 4.0 55.2 1.0 ND1 A:HIS3642 4.1 49.8 1.0 O31 A:IHP3802 4.2 68.0 1.0 O A:HOH3924 4.3 28.4 1.0 C1 A:IHP3802 4.5 62.1 1.0 C2 A:IHP3802 4.6 61.6 1.0 O41 A:IHP3802 4.6 60.9 1.0 CB A:SER3615 4.7 57.4 1.0 O42 A:IHP3802 4.8 61.5 1.0 CD2 A:HIS3642 4.9 46.1 1.0

L.Chen, H.Khan, L.Tan, X.Li, G.Zhang, Y.J.Im. Structural Basis of the Activation of Martx Cysteine Protease From Vibrio Vunificus To Be Published.