Sodium in PDB 8y4x: Apo Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum.

The binding sites of Sodium atom in the Apo Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum. (pdb code 8y4x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Apo Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum., PDB code: 8y4x:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Apo Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Apo Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na701 b:26.4 occ:1.00 O A:GLY337 2.2 38.5 1.0 O A:PRO342 2.3 42.1 1.0 O A:SER295 2.4 38.1 1.0 O A:SER298 2.5 35.4 1.0 O A:VAL340 2.7 32.5 1.0 C A:GLY337 3.3 37.2 1.0 C A:SER295 3.4 31.3 1.0 C A:PRO342 3.5 37.8 1.0 C A:SER298 3.6 37.9 1.0 CA A:GLY299 3.7 37.1 1.0 CA A:SER295 3.8 33.6 1.0 C A:VAL340 3.9 33.9 1.0 CB A:SER295 3.9 35.9 1.0 CA A:GLY337 4.0 35.8 1.0 N A:GLY299 4.1 40.5 1.0 N A:PRO342 4.1 29.7 1.0 C A:PRO341 4.3 35.4 1.0 N A:PRO338 4.3 36.0 1.0 CA A:PRO342 4.4 29.5 1.0 N A:SER343 4.4 32.4 1.0 CD A:PRO342 4.4 34.1 1.0 CA A:SER343 4.5 27.1 1.0 CA A:PRO338 4.5 38.5 1.0 C A:GLY299 4.5 38.7 1.0 N A:GLY296 4.6 28.5 1.0 O A:PRO341 4.6 43.2 1.0 CB A:SER343 4.6 26.1 1.0 N A:VAL340 4.6 30.6 1.0 CA A:VAL340 4.7 30.6 1.0 CG A:PRO342 4.8 34.8 1.0 OG A:SER295 4.8 38.0 1.0 CA A:PRO341 4.8 35.7 1.0 O A:ILE336 4.8 39.0 1.0 N A:PRO341 4.8 37.3 1.0 N A:LEU339 4.8 39.2 1.0 CA A:SER298 4.8 38.5 1.0 OG A:SER298 4.9 40.6 1.0 CB A:VAL340 4.9 27.2 1.0 C A:PRO338 4.9 40.2 1.0 N A:SER298 4.9 33.4 1.0 N A:SER300 5.0 39.2 1.0

Sodium binding site 2 out of 2 in the Apo Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Apo Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na702 b:27.6 occ:1.00 OE1 A:GLU312 2.8 35.4 1.0 O A:THR330 3.2 31.9 1.0 OG A:SER291 3.3 30.1 1.0 OG A:SER333 3.4 27.3 1.0 OG1 A:THR330 3.4 34.8 1.0 OD1 A:ASP304 3.5 52.9 1.0 CD A:GLU312 3.6 36.8 1.0 OE2 A:GLU312 3.7 43.1 1.0 OD1 A:ASN287 3.8 25.9 1.0 C A:THR330 4.1 29.3 1.0 SG A:CYS334 4.2 49.6 1.0 CA A:THR330 4.2 29.2 1.0 CB A:LEU308 4.4 35.0 1.0 CG A:ASP304 4.4 52.0 1.0 CB A:THR330 4.4 28.7 1.0 O A:ASP304 4.5 54.2 1.0 CB A:SER333 4.5 26.0 1.0 N A:CYS334 4.5 32.4 1.0 CB A:SER291 4.6 28.2 1.0 CA A:ALA305 4.6 49.0 1.0 C A:SER333 4.7 29.9 1.0 CA A:CYS334 4.8 32.5 1.0 CG A:ASN287 4.8 24.3 1.0 C A:ASP304 4.8 47.9 1.0 N A:ALA305 4.9 48.6 1.0 O A:SER333 4.9 30.8 1.0 C A:LEU308 5.0 42.1 1.0 OD2 A:ASP304 5.0 51.7 1.0

P.Goyal, S.Ramaswamy, K.R.Vinothkumar. Apo Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum. To Be Published.