Sodium in PDB 8y4w: Sialic Acid Bound Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum.

The binding sites of Sodium atom in the Sialic Acid Bound Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum. (pdb code 8y4w). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Sialic Acid Bound Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum., PDB code: 8y4w:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Sialic Acid Bound Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Sialic Acid Bound Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na701 b:41.3 occ:1.00 O A:GLY337 2.2 39.6 1.0 O A:PRO342 2.3 43.6 1.0 O A:VAL340 2.3 33.9 1.0 O A:SER295 2.4 36.3 1.0 O A:SER298 2.7 38.3 1.0 C A:GLY337 3.3 39.1 1.0 C A:SER295 3.4 31.1 1.0 C A:VAL340 3.4 36.3 1.0 C A:PRO342 3.4 39.8 1.0 C A:SER298 3.8 44.6 1.0 CA A:SER295 3.8 30.7 1.0 N A:PRO342 3.8 34.6 1.0 C A:PRO341 3.9 39.8 1.0 CB A:SER295 3.9 34.0 1.0 CA A:GLY337 4.0 37.2 1.0 CA A:GLY299 4.0 39.6 1.0 CD A:PRO342 4.2 36.3 1.0 O A:PRO341 4.2 44.5 1.0 CA A:PRO342 4.2 35.5 1.0 CA A:VAL340 4.3 36.2 1.0 N A:VAL340 4.3 35.0 1.0 N A:PRO341 4.3 39.6 1.0 N A:GLY299 4.3 45.3 1.0 N A:PRO338 4.4 40.5 1.0 CA A:PRO341 4.4 38.7 1.0 N A:SER343 4.4 34.7 1.0 CB A:VAL340 4.5 36.2 1.0 CA A:PRO338 4.6 36.8 1.0 N A:GLY296 4.6 31.2 1.0 CA A:SER343 4.6 32.3 1.0 O A:ILE336 4.6 42.0 1.0 CG A:PRO342 4.6 36.3 1.0 CB A:SER343 4.7 35.3 1.0 N A:LEU339 4.7 39.7 1.0 OG A:SER295 4.8 36.4 1.0 C A:PRO338 4.9 38.3 1.0 C A:GLY299 4.9 39.8 1.0 OG A:SER298 4.9 45.5 1.0 CA A:SER298 5.0 47.3 1.0 C A:LEU339 5.0 39.0 1.0 N A:SER298 5.0 40.8 1.0 CA A:GLY296 5.0 32.4 1.0

Sodium binding site 2 out of 3 in the Sialic Acid Bound Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Sialic Acid Bound Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na702 b:35.9 occ:1.00 O A:GLY558 2.2 33.2 1.0 O A:MET564 2.2 39.4 1.0 O A:GLY517 2.3 43.0 1.0 OG1 A:THR561 2.3 38.1 1.0 O A:THR561 2.9 37.2 1.0 CA A:MET518 3.2 30.9 1.0 O A:MET518 3.2 40.8 1.0 C A:GLY517 3.3 35.9 1.0 C A:MET564 3.3 42.3 1.0 C A:GLY558 3.4 32.3 1.0 C A:MET518 3.4 36.3 1.0 CB A:THR561 3.6 35.1 1.0 N A:MET518 3.6 31.8 1.0 C A:THR561 3.8 33.5 1.0 N A:THR561 4.0 32.8 1.0 CA A:THR561 4.0 34.1 1.0 N A:MET564 4.0 40.6 1.0 CA A:GLY558 4.0 31.8 1.0 N A:GLY565 4.1 42.7 1.0 CA A:MET564 4.1 41.4 1.0 CA A:GLY565 4.2 38.2 1.0 N A:ILE559 4.4 30.4 1.0 CB A:MET518 4.4 31.3 1.0 N A:PHE519 4.5 38.6 1.0 CB A:MET564 4.5 38.1 1.0 CA A:GLY517 4.6 32.5 1.0 CA A:ILE559 4.6 29.6 1.0 CD A:PRO563 4.7 42.0 1.0 CG2 A:THR561 4.7 28.6 1.0 O A:ILE520 4.8 46.5 1.0 N A:LEU560 4.9 31.4 1.0 C A:ILE559 4.9 31.1 1.0 CG A:MET518 4.9 33.2 1.0 N A:PRO562 5.0 34.0 1.0

Sodium binding site 3 out of 3 in the Sialic Acid Bound Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Sialic Acid Bound Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na703 b:35.8 occ:1.00 OE1 A:GLU312 2.8 39.1 1.0 O A:THR330 3.0 33.0 1.0 OG1 A:THR330 3.3 36.9 1.0 OG A:SER333 3.4 28.1 1.0 OD1 A:ASP304 3.4 53.8 1.0 OG A:SER291 3.5 34.3 1.0 OE2 A:GLU312 3.5 36.3 1.0 CD A:GLU312 3.5 35.8 1.0 OD1 A:ASN287 3.7 24.4 1.0 C A:THR330 3.9 30.5 1.0 CA A:THR330 4.0 30.7 1.0 CB A:THR330 4.3 34.9 1.0 SG A:CYS334 4.3 49.9 1.0 CG A:ASP304 4.5 54.2 1.0 O A:ASP304 4.5 47.1 1.0 CB A:LEU308 4.5 33.8 1.0 CB A:SER333 4.5 28.0 1.0 N A:CYS334 4.5 35.2 1.0 C A:SER333 4.6 34.8 1.0 CG A:ASN287 4.7 25.1 1.0 CA A:ALA305 4.7 44.5 1.0 CB A:SER291 4.8 29.8 1.0 CA A:CYS334 4.8 34.2 1.0 C A:ASP304 4.8 47.5 1.0 O A:SER333 4.8 35.2 1.0 ND2 A:ASN287 4.9 26.8 1.0 N A:ALA305 5.0 46.1 1.0 CG A:GLU312 5.0 30.0 1.0

P.Goyal, S.Ramaswamy, K.R.Vinothkumar. Sialic Acid Bound Form of Tripartite Atp-Independent Periplasmic (Trap) Transporter From Fusobacterium Nucleatum. To Be Published.