Sodium in PDB 8xmh: Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta, Vertical C2 Symmetry Axis

The structure of Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta, Vertical C2 Symmetry Axis also contains other interesting chemical elements:

Potassium

(K)

4 atoms

The binding sites of Sodium atom in the Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta, Vertical C2 Symmetry Axis (pdb code 8xmh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta, Vertical C2 Symmetry Axis, PDB code: 8xmh:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta, Vertical C2 Symmetry Axis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta, Vertical C2 Symmetry Axis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:9.7 occ:1.00 O3G A:ATP301 2.5 9.9 1.0 OE2 A:GLU125 2.6 14.1 1.0 OE2 B:GLU125 2.6 11.0 1.0 O3G B:ATP301 2.6 14.8 1.0 NH2 B:ARG16 2.7 19.8 1.0 NH2 A:ARG16 2.7 19.8 1.0 CZ A:ARG16 3.4 19.8 1.0 CZ B:ARG16 3.4 19.8 1.0 CD A:GLU125 3.5 14.1 1.0 CD B:GLU125 3.5 11.0 1.0 CG A:GLU125 3.8 14.1 1.0 CG B:GLU125 3.9 11.0 1.0 PG A:ATP301 3.9 9.9 1.0 NE A:ARG16 4.0 19.8 1.0 PG B:ATP301 4.0 14.8 1.0 NE B:ARG16 4.0 19.8 1.0 NH1 A:ARG16 4.1 19.8 1.0 NH1 B:ARG16 4.1 19.8 1.0 O2G A:ATP301 4.2 9.9 1.0 O2G B:ATP301 4.3 14.8 1.0 O2B B:ATP301 4.4 14.8 1.0 O2B A:ATP301 4.5 9.9 1.0 O1B B:ATP301 4.5 14.8 1.0 O1B A:ATP301 4.5 9.9 1.0 OE1 A:GLU125 4.6 14.1 1.0 O3B A:ATP301 4.6 9.9 1.0 OE1 B:GLU125 4.6 11.0 1.0 NZ A:LYS103 4.6 19.8 1.0 O3B B:ATP301 4.6 14.8 1.0 NZ B:LYS103 4.7 14.5 1.0 PB A:ATP301 4.7 9.9 1.0 PB B:ATP301 4.7 14.8 1.0 O1G A:ATP301 5.0 9.9 1.0

Sodium binding site 2 out of 4 in the Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta, Vertical C2 Symmetry Axis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta, Vertical C2 Symmetry Axis within 5.0Å range: probe atom residue distance (Å) B Occ D:Na301 b:11.3 occ:1.00 O3G D:ATP302 2.5 10.6 1.0 OE2 D:GLU125 2.5 12.5 1.0 O3G C:ATP301 2.5 15.7 1.0 OE2 C:GLU125 2.6 13.3 1.0 NH2 C:ARG16 2.6 19.8 1.0 NH2 D:ARG16 2.7 19.8 1.0 CZ C:ARG16 3.4 19.8 1.0 CZ D:ARG16 3.4 19.8 1.0 CD D:GLU125 3.5 12.5 1.0 CD C:GLU125 3.6 13.3 1.0 CG D:GLU125 3.9 12.5 1.0 PG D:ATP302 3.9 10.6 1.0 CG C:GLU125 3.9 13.3 1.0 PG C:ATP301 3.9 15.7 1.0 NE C:ARG16 3.9 19.8 1.0 NE D:ARG16 4.0 19.8 1.0 NH1 C:ARG16 4.1 19.8 1.0 NH1 D:ARG16 4.2 19.8 1.0 O2G D:ATP302 4.2 10.6 1.0 O2G C:ATP301 4.2 15.7 1.0 O2B D:ATP302 4.4 10.6 1.0 O2B C:ATP301 4.4 15.7 1.0 O1B D:ATP302 4.4 10.6 1.0 O1B C:ATP301 4.5 15.7 1.0 O3B D:ATP302 4.5 10.6 1.0 NZ D:LYS103 4.6 19.8 1.0 OE1 D:GLU125 4.6 12.5 1.0 O3B C:ATP301 4.6 15.7 1.0 OE1 C:GLU125 4.6 13.3 1.0 NZ C:LYS103 4.6 16.5 1.0 PB D:ATP302 4.6 10.6 1.0 PB C:ATP301 4.7 15.7 1.0 O1G D:ATP302 5.0 10.6 1.0

Sodium binding site 3 out of 4 in the Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta, Vertical C2 Symmetry Axis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta, Vertical C2 Symmetry Axis within 5.0Å range: probe atom residue distance (Å) B Occ E:Na302 b:10.0 occ:1.00 O3G E:ATP301 2.5 10.1 1.0 OE2 E:GLU125 2.6 13.2 1.0 O3G F:ATP301 2.6 17.3 1.0 OE2 F:GLU125 2.6 11.1 1.0 NH2 F:ARG16 2.7 19.8 1.0 NH2 E:ARG16 2.7 19.8 1.0 CZ E:ARG16 3.4 19.8 1.0 CZ F:ARG16 3.4 19.8 1.0 CD E:GLU125 3.5 13.2 1.0 CD F:GLU125 3.5 11.1 1.0 CG E:GLU125 3.8 13.2 1.0 CG F:GLU125 3.9 11.1 1.0 PG E:ATP301 3.9 10.1 1.0 PG F:ATP301 4.0 17.3 1.0 NE E:ARG16 4.0 19.8 1.0 NE F:ARG16 4.0 19.8 1.0 NH1 E:ARG16 4.1 19.8 1.0 NH1 F:ARG16 4.1 19.8 1.0 O2G E:ATP301 4.3 10.1 1.0 O2G F:ATP301 4.3 17.3 1.0 O2B F:ATP301 4.4 17.3 1.0 O2B E:ATP301 4.5 10.1 1.0 O1B F:ATP301 4.5 17.3 1.0 O1B E:ATP301 4.5 10.1 1.0 OE1 E:GLU125 4.6 13.2 1.0 O3B E:ATP301 4.6 10.1 1.0 OE1 F:GLU125 4.6 11.1 1.0 O3B F:ATP301 4.6 17.3 1.0 NZ E:LYS103 4.6 19.8 1.0 NZ F:LYS103 4.6 11.1 1.0 PB F:ATP301 4.7 17.3 1.0 PB E:ATP301 4.7 10.1 1.0

Sodium binding site 4 out of 4 in the Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta, Vertical C2 Symmetry Axis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta, Vertical C2 Symmetry Axis within 5.0Å range: probe atom residue distance (Å) B Occ H:Na301 b:11.2 occ:1.00 O3G H:ATP302 2.5 10.4 1.0 OE2 H:GLU125 2.5 11.7 1.0 OE2 G:GLU125 2.6 13.3 1.0 O3G G:ATP301 2.6 14.6 1.0 NH2 G:ARG16 2.7 19.8 1.0 NH2 H:ARG16 2.7 19.8 1.0 CZ G:ARG16 3.4 19.8 1.0 CZ H:ARG16 3.4 19.8 1.0 CD H:GLU125 3.5 11.7 1.0 CD G:GLU125 3.5 13.3 1.0 CG H:GLU125 3.8 11.7 1.0 CG G:GLU125 3.8 13.3 1.0 PG H:ATP302 3.9 10.4 1.0 NE H:ARG16 4.0 19.8 1.0 NE G:ARG16 4.0 19.8 1.0 PG G:ATP301 4.0 14.6 1.0 NH1 G:ARG16 4.1 19.8 1.0 NH1 H:ARG16 4.1 19.8 1.0 O2G H:ATP302 4.2 10.4 1.0 O2G G:ATP301 4.3 14.6 1.0 O2B H:ATP302 4.5 10.4 1.0 O1B H:ATP302 4.5 10.4 1.0 O2B G:ATP301 4.5 14.6 1.0 O1B G:ATP301 4.6 14.6 1.0 OE1 H:GLU125 4.6 11.7 1.0 NZ H:LYS103 4.6 19.8 1.0 O3B H:ATP302 4.6 10.4 1.0 OE1 G:GLU125 4.6 13.3 1.0 O3B G:ATP301 4.7 14.6 1.0 NZ G:LYS103 4.7 24.9 1.0 PB H:ATP302 4.7 10.4 1.0 PB G:ATP301 4.8 14.6 1.0 O1G H:ATP302 5.0 10.4 1.0

Y.K.Chang, W.T.Chiang, N.J.Hu, M.D.Tsai. Potassium Transporter Ktrab From Bacillus Subtilis in Atp-Bound State with Addition of Edta and Egta, Vertical C2 Symmetry Axis To Be Published.