Sodium in PDB 8wug: The Crystal Structure of JMJD2D From Biortus.

The structure of The Crystal Structure of JMJD2D From Biortus., PDB code: 8wug was solved by F.Wang, W.Cheng, Z.Yuan, D.Lin, S.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.89 / 1.70
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	71.34, 71.34, 150.873, 90, 90, 90
R / Rfree (%)	16.1 / 18.8

The structure of The Crystal Structure of JMJD2D From Biortus. also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Sodium atom in the The Crystal Structure of JMJD2D From Biortus. (pdb code 8wug). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Crystal Structure of JMJD2D From Biortus., PDB code: 8wug:

Sodium binding site 1 out of 1 in the The Crystal Structure of JMJD2D From Biortus.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of JMJD2D From Biortus. within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:21.6 occ:1.00 OE2 A:GLU194 2.3 20.4 1.0 NE2 A:HIS280 2.3 18.9 1.0 O A:HOH706 2.4 30.3 1.0 O A:HOH695 2.4 31.2 1.0 O A:HOH830 2.4 34.8 1.0 NE2 A:HIS192 2.4 24.6 1.0 CE1 A:HIS280 3.0 17.1 1.0 CE1 A:HIS192 3.2 25.4 1.0 CD A:GLU194 3.3 18.7 1.0 CD2 A:HIS192 3.5 22.4 1.0 CD2 A:HIS280 3.5 16.4 1.0 OE1 A:GLU194 3.6 19.4 1.0 ND1 A:HIS280 4.2 16.7 1.0 O A:HOH644 4.3 39.6 1.0 O A:HOH657 4.3 48.5 1.0 OG A:SER200 4.3 13.8 0.5 ND1 A:HIS192 4.3 23.5 1.0 CG A:HIS280 4.4 15.3 1.0 CG A:HIS192 4.5 20.4 1.0 CG A:GLU194 4.6 16.6 1.0 CB A:SER200 4.9 15.5 0.5 CB A:SER200 5.0 14.2 0.5

F.Wang, W.Cheng, Z.Yuan, D.Lin, S.Guo. The Crystal Structure of JMJD2D From Biortus. To Be Published.