Sodium in PDB 8wch: Crystal Structure of SAR11_0655 Bound to A Co-Purified Ligand, L- Pyroglutamate

The structure of Crystal Structure of SAR11_0655 Bound to A Co-Purified Ligand, L- Pyroglutamate, PDB code: 8wch was solved by B.E.Clifton, P.Laurino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.30 / 1.52
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	122.204, 122.204, 125.908, 90, 90, 90
R / Rfree (%)	15 / 18.7

The binding sites of Sodium atom in the Crystal Structure of SAR11_0655 Bound to A Co-Purified Ligand, L- Pyroglutamate (pdb code 8wch). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of SAR11_0655 Bound to A Co-Purified Ligand, L- Pyroglutamate, PDB code: 8wch:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of SAR11_0655 Bound to A Co-Purified Ligand, L- Pyroglutamate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of SAR11_0655 Bound to A Co-Purified Ligand, L- Pyroglutamate within 5.0Å range: probe atom residue distance (Å) B Occ A:Na502 b:27.0 occ:1.00 O A:ILE54 2.3 25.8 1.0 O A:ASP69 2.3 29.5 1.0 O A:ASN57 2.4 29.7 1.0 O A:LEU66 2.4 26.5 1.0 O A:ALA67 2.4 27.6 1.0 O A:ILE55 2.5 26.3 1.0 C A:ALA67 3.1 27.4 1.0 C A:ILE55 3.1 24.8 1.0 C A:ILE54 3.4 23.6 1.0 CA A:ALA67 3.4 28.0 1.0 C A:ASN57 3.5 30.4 1.0 C A:ASP69 3.5 29.6 1.0 CA A:ILE55 3.5 24.1 1.0 C A:LEU66 3.5 24.8 1.0 N A:ILE55 3.9 23.4 1.0 N A:ALA67 3.9 25.8 1.0 O A:HOH671 4.0 27.8 1.0 N A:ASP69 4.1 28.2 1.0 N A:LYS68 4.1 26.0 1.0 N A:ASN57 4.1 28.1 1.0 N A:ASN56 4.2 22.7 1.0 CA A:SER58 4.2 31.6 1.0 N A:SER58 4.3 30.5 1.0 C A:LYS68 4.3 29.4 1.0 N A:ALA70 4.4 30.6 1.0 CA A:ASP69 4.4 31.2 1.0 CA A:ALA70 4.4 31.0 1.0 CA A:ASN57 4.5 30.8 1.0 N A:HIS59 4.5 33.1 1.0 C A:ASN56 4.6 27.3 1.0 N A:GLY71 4.6 28.2 1.0 CA A:ILE54 4.7 22.8 1.0 O A:LYS68 4.7 32.5 1.0 CA A:LEU66 4.8 23.9 1.0 CA A:LYS68 4.8 28.5 1.0 CB A:ALA67 4.8 29.9 1.0 CA A:ASN56 4.8 26.3 1.0 CD2 A:HIS59 4.8 31.6 1.0 C A:SER58 4.9 31.8 1.0 O A:ASP53 4.9 28.5 1.0 CB A:ILE55 4.9 24.2 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of SAR11_0655 Bound to A Co-Purified Ligand, L- Pyroglutamate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of SAR11_0655 Bound to A Co-Purified Ligand, L- Pyroglutamate within 5.0Å range: probe atom residue distance (Å) B Occ B:Na502 b:33.9 occ:1.00 O B:ILE54 2.3 29.8 1.0 O B:ASP69 2.3 39.7 1.0 O B:LEU66 2.4 32.2 1.0 O B:ASN57 2.4 35.9 1.0 O B:ALA67 2.4 35.7 1.0 O B:ILE55 2.5 31.5 1.0 C B:ALA67 3.1 35.0 1.0 C B:ILE55 3.1 28.1 1.0 C B:ILE54 3.4 28.1 1.0 C B:ASP69 3.5 40.2 1.0 C B:LEU66 3.5 32.6 1.0 C B:ASN57 3.5 37.8 1.0 CA B:ALA67 3.5 35.2 1.0 CA B:ILE55 3.5 28.5 1.0 N B:ILE55 3.8 25.5 1.0 N B:ALA67 3.9 31.0 1.0 N B:ASN57 4.1 36.6 1.0 N B:ASP69 4.1 40.3 1.0 N B:LYS68 4.1 38.3 1.0 O B:HOH643 4.1 32.5 1.0 N B:ASN56 4.2 29.8 1.0 CA B:SER58 4.3 39.4 1.0 N B:SER58 4.3 38.3 1.0 N B:ALA70 4.3 41.5 1.0 C B:LYS68 4.4 43.7 1.0 CA B:ASP69 4.4 42.4 1.0 CA B:ALA70 4.4 39.2 1.0 CA B:ASN57 4.4 36.2 1.0 N B:HIS59 4.5 41.9 1.0 C B:ASN56 4.6 33.7 1.0 N B:GLY71 4.6 34.6 1.0 CA B:ILE54 4.6 27.9 1.0 O B:LYS68 4.7 43.6 1.0 CA B:LEU66 4.8 32.7 1.0 CA B:LYS68 4.8 40.2 1.0 O B:ASP53 4.8 29.7 1.0 CA B:ASN56 4.9 31.1 1.0 CD2 B:HIS59 4.9 35.1 1.0 C B:SER58 4.9 40.6 1.0 CB B:ALA67 4.9 32.5 1.0 CB B:ILE55 4.9 28.3 1.0

B.E.Clifton, P.Laurino. Crystal Structure of SAR11_0655 Bound to A Co-Purified Ligand, L-Pyroglutamate To Be Published.