Sodium in PDB 8w2c: Thioesterase Domain Structure From Sulfazecin Biosynthetic Nonribosomal Peptide Synthetase Sulm

The structure of Thioesterase Domain Structure From Sulfazecin Biosynthetic Nonribosomal Peptide Synthetase Sulm, PDB code: 8w2c was solved by K.D.Patel, A.M.Gulick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.27 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	47.096, 83.19, 69.38, 90, 101.36, 90
R / Rfree (%)	17.5 / 21.5

The binding sites of Sodium atom in the Thioesterase Domain Structure From Sulfazecin Biosynthetic Nonribosomal Peptide Synthetase Sulm (pdb code 8w2c). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Thioesterase Domain Structure From Sulfazecin Biosynthetic Nonribosomal Peptide Synthetase Sulm, PDB code: 8w2c:

Sodium binding site 1 out of 1 in the Thioesterase Domain Structure From Sulfazecin Biosynthetic Nonribosomal Peptide Synthetase Sulm


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Thioesterase Domain Structure From Sulfazecin Biosynthetic Nonribosomal Peptide Synthetase Sulm within 5.0Å range: probe atom residue distance (Å) B Occ A:Na3007 b:18.6 occ:1.00 H A:LEU2959 2.7 30.3 1.0 HA A:TYR2957 2.7 26.9 1.0 HB2 A:LEU2959 2.8 30.0 1.0 O A:HOH3211 3.0 32.5 1.0 HD1 A:TYR2957 3.0 32.3 1.0 O A:HOH3207 3.1 30.3 1.0 HG2 A:GLN2817 3.1 35.6 1.0 HB3 A:TYR2957 3.3 30.3 1.0 CA A:TYR2957 3.4 22.4 1.0 N A:LEU2959 3.4 25.3 1.0 H A:ARG2960 3.4 35.0 1.0 H A:LEU2958 3.5 29.4 1.0 C A:TYR2957 3.5 24.4 1.0 HG A:LEU2959 3.6 30.5 1.0 HD12 A:LEU2959 3.6 32.5 1.0 N A:LEU2958 3.6 24.5 1.0 CB A:LEU2959 3.6 25.0 1.0 CB A:TYR2957 3.8 25.2 1.0 CD1 A:TYR2957 3.8 26.9 1.0 HE21 A:GLN2817 3.9 35.2 1.0 CG A:GLN2817 3.9 29.7 1.0 HB3 A:ASN2749 4.0 34.5 1.0 CG A:LEU2959 4.0 25.4 1.0 CA A:LEU2959 4.0 25.6 1.0 N A:ARG2960 4.1 29.2 1.0 O A:TYR2957 4.1 26.9 1.0 HG3 A:GLN2817 4.2 35.6 1.0 NE2 A:GLN2817 4.2 29.4 1.0 CG A:ASN2749 4.2 33.5 1.0 OD1 A:ASN2749 4.3 35.7 1.0 CG A:TYR2957 4.3 28.2 1.0 CD1 A:LEU2959 4.3 27.1 1.0 CD A:GLN2817 4.3 28.1 1.0 HB3 A:LEU2959 4.4 30.0 1.0 C A:LEU2958 4.4 26.6 1.0 HB2 A:ARG2960 4.5 37.0 1.0 C A:LEU2959 4.5 28.8 1.0 O A:HIS2956 4.5 27.1 1.0 ND2 A:ASN2749 4.6 37.8 1.0 CB A:ASN2749 4.6 28.7 1.0 CA A:LEU2958 4.6 26.8 1.0 HB2 A:TYR2957 4.6 30.3 1.0 HB3 A:ARG2960 4.7 37.0 1.0 N A:TYR2957 4.7 22.9 1.0 HD21 A:ASN2749 4.7 45.4 1.0 HE22 A:GLN2817 4.7 35.2 1.0 HB2 A:LEU2958 4.8 31.8 1.0 O A:HOH3230 4.8 40.9 1.0 HB2 A:ASN2749 4.8 34.5 1.0 HD22 A:ASN2749 4.9 45.4 1.0 HD13 A:LEU2959 4.9 32.5 1.0 HA A:LEU2959 4.9 30.7 1.0 HD11 A:LEU2959 4.9 32.5 1.0 CE1 A:TYR2957 4.9 28.8 1.0 CB A:ARG2960 5.0 30.8 1.0

K.D.Patel, R.A.Oliver, M.S.Lichstrahl, R.Li, C.A.Townsend, A.M.Gulick. The Structure of the Monobactam-Producing Thioesterase Domain of Sulm Forms A Unique Complex with the Upstream Carrier Protein Domain. To Be Published.