Sodium in PDB 8vme: Crystal Structure of the Gsk-3/Axin Complex Bound to A Phosphorylated Beta-Catenin T41A Peptide

Enzymatic activity of Crystal Structure of the Gsk-3/Axin Complex Bound to A Phosphorylated Beta-Catenin T41A Peptide

All present enzymatic activity of Crystal Structure of the Gsk-3/Axin Complex Bound to A Phosphorylated Beta-Catenin T41A Peptide:
2.7.11.1; 2.7.11.26;

Protein crystallography data

The structure of Crystal Structure of the Gsk-3/Axin Complex Bound to A Phosphorylated Beta-Catenin T41A Peptide, PDB code: 8vme was solved by M.D.Enos, M.Gavagan, N.Jameson, J.G.Zalatan, W.I.Weis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.47 / 2.30
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 82.257, 82.257, 280.99, 90, 90, 120
R / Rfree (%) n/a / 23

Other elements in 8vme:

The structure of Crystal Structure of the Gsk-3/Axin Complex Bound to A Phosphorylated Beta-Catenin T41A Peptide also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Gsk-3/Axin Complex Bound to A Phosphorylated Beta-Catenin T41A Peptide (pdb code 8vme). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Gsk-3/Axin Complex Bound to A Phosphorylated Beta-Catenin T41A Peptide, PDB code: 8vme:

Sodium binding site 1 out of 1 in 8vme

Go back to Sodium Binding Sites List in 8vme
Sodium binding site 1 out of 1 in the Crystal Structure of the Gsk-3/Axin Complex Bound to A Phosphorylated Beta-Catenin T41A Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Gsk-3/Axin Complex Bound to A Phosphorylated Beta-Catenin T41A Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na410

b:74.9
occ:1.00
 OH A:TYR161 3.6 75.2 1.0
OH A:TYR146 3.7 53.1 1.0
CE2 A:TYR157 3.8 70.8 1.0
CD2 A:TYR157 3.9 61.3 1.0
CZ A:TYR157 4.0 67.0 1.0
CG1 A:VAL142 4.0 54.5 1.0
CG A:TYR157 4.2 59.6 1.0
CD1 A:LEU153 4.2 58.5 1.0
CE1 A:TYR157 4.3 62.6 1.0
CE2 A:TYR146 4.3 56.2 1.0
CD1 A:TYR157 4.4 65.8 1.0
CZ A:TYR146 4.5 63.7 1.0
OH A:TYR157 4.5 86.1 1.0
CZ A:TYR161 4.7 67.3 1.0
CE2 A:TYR161 4.9 58.2 1.0

Reference:

M.D.Enos, M.Gavagan, N.Jameson, J.G.Zalatan, W.I.Weis. Structural and Functional Effects of Phosphopriming and Scaffolding in the Kinase GSK3BETA Sci.Signal. 2024.
ISSN: ESSN 1937-9145
DOI: 10.1126/SCISIGNAL.ADO0881
Page generated: Wed Oct 9 14:03:30 2024

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