Atomistry » Sodium » PDB 8uze-8vj2 » 8vj2
Atomistry »
  Sodium »
    PDB 8uze-8vj2 »
      8vj2 »

Sodium in PDB 8vj2: Crystal Structure of Macrophage Migration Inhibitory Factor-1 (MIF1) From Onchocerca Volvulus

Protein crystallography data

The structure of Crystal Structure of Macrophage Migration Inhibitory Factor-1 (MIF1) From Onchocerca Volvulus, PDB code: 8vj2 was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.45 / 1.90
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 52.441, 91.127, 132.487, 90, 90, 90
R / Rfree (%) 21.7 / 23.6

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Macrophage Migration Inhibitory Factor-1 (MIF1) From Onchocerca Volvulus (pdb code 8vj2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Macrophage Migration Inhibitory Factor-1 (MIF1) From Onchocerca Volvulus, PDB code: 8vj2:

Sodium binding site 1 out of 1 in 8vj2

Go back to Sodium Binding Sites List in 8vj2
Sodium binding site 1 out of 1 in the Crystal Structure of Macrophage Migration Inhibitory Factor-1 (MIF1) From Onchocerca Volvulus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Macrophage Migration Inhibitory Factor-1 (MIF1) From Onchocerca Volvulus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na201

b:73.9
occ:1.00
OE1 C:GLU78 2.9 92.9 1.0
OE2 C:GLU78 3.6 97.1 1.0
CD C:GLU78 3.7 98.1 1.0
CE2 C:PHE81 4.2 61.9 1.0
CD2 C:PHE81 4.5 66.3 1.0
CA A:GLY-3 4.5 99.8 1.0
CZ C:PHE81 4.9 59.4 1.0

Reference:

L.Liu, S.Lovell, K.P.Battaile, A.Cooper. Crystal Structure of Macrophage Migration Inhibitory Factor-1 (MIF1) From Onchocerca Volvulus To Be Published.
Page generated: Wed Oct 9 14:02:45 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy