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Sodium in PDB 8vj2: Crystal Structure of Macrophage Migration Inhibitory Factor-1 (MIF1) From Onchocerca Volvulus

Protein crystallography data

The structure of Crystal Structure of Macrophage Migration Inhibitory Factor-1 (MIF1) From Onchocerca Volvulus, PDB code: 8vj2 was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.45 / 1.90
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 52.441, 91.127, 132.487, 90, 90, 90
R / Rfree (%) 21.7 / 23.6

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Macrophage Migration Inhibitory Factor-1 (MIF1) From Onchocerca Volvulus (pdb code 8vj2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Macrophage Migration Inhibitory Factor-1 (MIF1) From Onchocerca Volvulus, PDB code: 8vj2:

Sodium binding site 1 out of 1 in 8vj2

Go back to Sodium Binding Sites List in 8vj2
Sodium binding site 1 out of 1 in the Crystal Structure of Macrophage Migration Inhibitory Factor-1 (MIF1) From Onchocerca Volvulus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Macrophage Migration Inhibitory Factor-1 (MIF1) From Onchocerca Volvulus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na201

b:73.9
occ:1.00
OE1 C:GLU78 2.9 92.9 1.0
OE2 C:GLU78 3.6 97.1 1.0
CD C:GLU78 3.7 98.1 1.0
CE2 C:PHE81 4.2 61.9 1.0
CD2 C:PHE81 4.5 66.3 1.0
CA A:GLY-3 4.5 99.8 1.0
CZ C:PHE81 4.9 59.4 1.0

Reference:

L.Liu, S.Lovell, K.P.Battaile, A.Cooper. Crystal Structure of Macrophage Migration Inhibitory Factor-1 (MIF1) From Onchocerca Volvulus To Be Published.
Page generated: Wed Oct 9 14:02:45 2024

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