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Sodium in PDB 8uc4: Apo X-Ray Crystal Structure of Cyclophilin D with A Surface Entropy Reduction Mutation (K175I)

Enzymatic activity of Apo X-Ray Crystal Structure of Cyclophilin D with A Surface Entropy Reduction Mutation (K175I)

All present enzymatic activity of Apo X-Ray Crystal Structure of Cyclophilin D with A Surface Entropy Reduction Mutation (K175I):
5.2.1.8;

Protein crystallography data

The structure of Apo X-Ray Crystal Structure of Cyclophilin D with A Surface Entropy Reduction Mutation (K175I), PDB code: 8uc4 was solved by D.F.Kreitler, A.M.Rangwala, M.A.Seeliger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.48 / 1.87
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 56.959, 56.959, 109.781, 90, 90, 90
R / Rfree (%) 18.2 / 21.1

Sodium Binding Sites:

The binding sites of Sodium atom in the Apo X-Ray Crystal Structure of Cyclophilin D with A Surface Entropy Reduction Mutation (K175I) (pdb code 8uc4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Apo X-Ray Crystal Structure of Cyclophilin D with A Surface Entropy Reduction Mutation (K175I), PDB code: 8uc4:

Sodium binding site 1 out of 1 in 8uc4

Go back to Sodium Binding Sites List in 8uc4
Sodium binding site 1 out of 1 in the Apo X-Ray Crystal Structure of Cyclophilin D with A Surface Entropy Reduction Mutation (K175I)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Apo X-Ray Crystal Structure of Cyclophilin D with A Surface Entropy Reduction Mutation (K175I) within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Na205

b:28.9
occ:0.50
 C2 X:PEG202 2.7 44.3 1.0
O1 X:PEG202 2.7 46.0 1.0
C3 X:PEG202 2.9 37.4 1.0
O4 X:PEG202 3.0 45.8 1.0
C1 X:PEG202 3.2 39.9 1.0
O2 X:PEG202 3.2 47.0 1.0
C4 X:PEG202 3.4 42.3 1.0

Reference:

D.F.Kreitler, M.A.Seeliger, A.M.Rangwala. Apo X-Ray Crystal Structure of Cyclophilin D with A Surface Entropy Reduction Mutation (K175I) To Be Published.
Page generated: Wed Oct 9 13:54:24 2024

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