Sodium in PDB 8u8w: Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate and Halides Bound)

The structure of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate and Halides Bound), PDB code: 8u8w was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.60 / 1.80
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	97.413, 97.413, 205.512, 90, 90, 120
R / Rfree (%)	16.4 / 18.7

The structure of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate and Halides Bound) also contains other interesting chemical elements:

Chlorine	(Cl)	2 atoms
Iodine	(I)	2 atoms

The binding sites of Sodium atom in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate and Halides Bound) (pdb code 8u8w). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate and Halides Bound), PDB code: 8u8w:

Sodium binding site 1 out of 1 in the Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate and Halides Bound)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate and Halides Bound) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:38.3 occ:1.00 O A:ASP40 2.3 37.7 1.0 OG1 A:THR75 2.4 37.9 1.0 O A:HOH578 2.4 43.6 1.0 O A:HOH603 2.4 39.0 1.0 O A:HOH491 2.4 39.0 1.0 O A:HOH505 2.4 41.6 1.0 C A:ASP40 3.3 38.5 1.0 CB A:THR75 3.5 33.4 1.0 CA A:ASP40 3.8 37.9 1.0 CB A:ASP40 3.8 37.0 1.0 O A:HIS4 3.9 44.1 1.0 N A:THR75 3.9 37.4 1.0 CA A:THR75 4.3 35.4 1.0 N A:GLY41 4.5 36.3 1.0 CG2 A:THR75 4.6 34.0 1.0 O A:HOH634 4.7 62.3 1.0 O A:HOH590 4.7 55.5 1.0 OD1 A:ASP40 4.8 42.7 1.0 CG A:ASP40 4.8 47.0 1.0 CE A:MET9 4.9 35.6 1.0 CA A:GLY41 4.9 35.2 1.0 O A:ARG6 4.9 43.2 1.0 C A:ILE74 5.0 44.7 1.0

S.Lovell, L.Liu, S.Seibold, K.P.Battaile. Crystal Structure of N-Acetylneuraminate Lyase (Nana) From Klebsiella Aerogenes (Pyruvate and Halides Bound) To Be Published.