Sodium in PDB 8u3j: TRPV1 in Nanodisc Bound with Empty Vanilloid Binding Pocket at 4C

Sodium Binding Sites:

The binding sites of Sodium atom in the TRPV1 in Nanodisc Bound with Empty Vanilloid Binding Pocket at 4C (pdb code 8u3j). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the TRPV1 in Nanodisc Bound with Empty Vanilloid Binding Pocket at 4C, PDB code: 8u3j:

Sodium binding site 1 out of 1 in 8u3j

Go back to Sodium Binding Sites List in 8u3j
Sodium binding site 1 out of 1 in the TRPV1 in Nanodisc Bound with Empty Vanilloid Binding Pocket at 4C


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of TRPV1 in Nanodisc Bound with Empty Vanilloid Binding Pocket at 4C within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na802

b:67.1
occ:1.00
O D:GLY643 2.8 38.2 1.0
O C:GLY643 2.8 38.2 1.0
O B:GLY643 2.8 38.2 1.0
O A:GLY643 2.8 38.2 1.0
HA3 D:GLY643 3.4 38.2 1.0
HA3 B:GLY643 3.4 38.2 1.0
HA3 A:GLY643 3.4 38.2 1.0
HA3 C:GLY643 3.4 38.2 1.0
C D:GLY643 3.8 38.2 1.0
C B:GLY643 3.8 38.2 1.0
C C:GLY643 3.8 38.2 1.0
C A:GLY643 3.8 38.2 1.0
CA D:GLY643 4.1 38.2 1.0
CA B:GLY643 4.1 38.2 1.0
CA C:GLY643 4.1 38.2 1.0
CA A:GLY643 4.1 38.2 1.0
HA2 D:GLY643 4.3 38.2 1.0
HA2 B:GLY643 4.3 38.2 1.0
HA2 C:GLY643 4.3 38.2 1.0
HA2 A:GLY643 4.3 38.2 1.0
HA D:MET644 4.8 37.6 1.0
HA C:MET644 4.8 37.6 1.0
HA B:MET644 4.8 37.6 1.0
HA A:MET644 4.8 37.6 1.0
HG2 D:MET644 4.8 37.6 1.0
HG2 C:MET644 4.8 37.6 1.0
HG2 B:MET644 4.8 37.6 1.0
HG2 A:MET644 4.8 37.6 1.0
SD C:MET644 4.9 37.6 1.0
SD D:MET644 4.9 37.6 1.0
SD A:MET644 4.9 37.6 1.0
SD B:MET644 4.9 37.6 1.0
N D:MET644 5.0 37.6 1.0
N C:MET644 5.0 37.6 1.0
N B:MET644 5.0 37.6 1.0

Reference:

W.R.Arnold, M.Mancino, F.R.Moss Iii, A.Frost, D.Julius, Y.Cheng. Structural Basis of TRPV1 Modulation By Endogenous Bioactive Lipids Nat.Struct.Mol.Biol. 2024.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-024-01299-2
Page generated: Wed Oct 9 13:49:36 2024

Last articles

Zn in 9FS1
Zn in 9FS3
Zn in 9FS2
Zn in 9H3H
Zn in 9F29
Zn in 9F2A
Zn in 9EY2
Zn in 9F26
Zn in 9E8J
Zn in 9E8N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy