Sodium in PDB 8u0r: The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex

The structure of The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex, PDB code: 8u0r was solved by U.Diesterbeck, A.G.Gittis, D.N.Garboczi, B.Moss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.31 / 2.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	46.86, 70.06, 78.95, 90, 95.29, 90
R / Rfree (%)	21.1 / 23.9

The structure of The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex also contains other interesting chemical elements:

Iodine	(I)	12 atoms
Chlorine	(Cl)	9 atoms

The binding sites of Sodium atom in the The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex (pdb code 8u0r). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex, PDB code: 8u0r:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Na214 b:42.0 occ:0.82 OD2 A:ASP88 2.4 35.9 1.0 NE B:ARG96 2.7 44.7 1.0 O B:TYR91 2.9 30.7 1.0 CG A:ASP88 3.2 38.7 1.0 OD1 A:ASP88 3.3 38.5 1.0 NH2 B:ARG96 3.5 42.2 1.0 CZ B:ARG96 3.5 45.5 1.0 CD B:ARG96 3.6 41.9 1.0 N B:TYR91 3.7 32.5 1.0 CB A:ASN68 3.8 51.1 1.0 C B:TYR91 3.9 34.8 1.0 CA A:ASN68 3.9 46.4 1.0 CB B:ARG96 4.0 46.5 1.0 CB B:ASP93 4.2 47.6 1.0 CA B:TYR91 4.3 36.3 1.0 C B:LEU90 4.3 39.2 1.0 CG B:ARG96 4.3 45.0 1.0 CB B:LEU90 4.5 30.9 1.0 CB B:TYR91 4.5 33.1 1.0 CA B:LEU90 4.6 35.8 1.0 CB A:ASP88 4.6 37.3 1.0 O A:ASN68 4.8 45.4 1.0 NH1 B:ARG96 4.8 44.3 1.0 N A:ASN68 4.8 40.3 1.0 C A:ASN68 4.8 47.8 1.0

Sodium binding site 2 out of 2 in the The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Na209 b:76.7 occ:1.00 OD1 C:ASP97 2.3 60.2 1.0 CG C:ASP97 3.2 57.4 1.0 OD2 C:ASP97 3.6 55.8 1.0 O C:LYS94 3.7 45.4 1.0 CB C:ASP97 4.3 46.4 1.0 C C:LYS94 4.8 43.6 1.0 O C:ARG96 4.9 44.9 1.0

U.Diesterbeck, A.Tak, A.G.Gittis, D.N.Garboczi, B.Moss. The Crystal Structure of Protein A21, A Component of the Conserved Poxvirus Entry-Fusion Complex To Be Published.