Sodium in PDB 8u07: Imine Reductase Rede Bound with Nadp+ and Arcyriaflavin A (Secondary Site)

The structure of Imine Reductase Rede Bound with Nadp+ and Arcyriaflavin A (Secondary Site), PDB code: 8u07 was solved by P.Daniel-Ivad, K.S.Ryan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.60 / 1.63
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	54.588, 111.529, 67.695, 90, 108.47, 90
R / Rfree (%)	19.4 / 22.1

The structure of Imine Reductase Rede Bound with Nadp+ and Arcyriaflavin A (Secondary Site) also contains other interesting chemical elements:

Iodine	(I)	7 atoms
Chlorine	(Cl)	7 atoms

The binding sites of Sodium atom in the Imine Reductase Rede Bound with Nadp+ and Arcyriaflavin A (Secondary Site) (pdb code 8u07). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Imine Reductase Rede Bound with Nadp+ and Arcyriaflavin A (Secondary Site), PDB code: 8u07:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Imine Reductase Rede Bound with Nadp+ and Arcyriaflavin A (Secondary Site)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Imine Reductase Rede Bound with Nadp+ and Arcyriaflavin A (Secondary Site) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na305 b:25.6 occ:1.00 O A:THR92 2.4 25.9 1.0 O A:HOH612 2.4 25.9 1.0 OD1 A:ASP115 2.4 21.6 1.0 O A:GLY116 2.4 21.2 1.0 OH A:TYR69 2.6 26.9 1.0 O A:ASN90 3.2 20.6 1.0 CG A:ASP115 3.4 22.6 1.0 C A:GLY116 3.6 21.7 1.0 C A:THR92 3.6 28.7 1.0 OD2 A:ASP115 3.8 25.2 1.0 CZ A:TYR69 3.8 27.2 1.0 N A:GLY116 3.8 20.9 1.0 CE1 A:TYR69 4.1 26.9 1.0 O A:HOH458 4.1 30.9 1.0 C A:LEU91 4.1 24.0 1.0 N A:THR92 4.1 22.5 1.0 CG1 A:VAL117 4.2 21.6 1.0 C A:ASN90 4.2 21.1 1.0 CA A:GLY116 4.3 23.1 1.0 CA A:LEU91 4.3 19.4 1.0 CA A:THR92 4.4 25.6 1.0 O A:LEU91 4.5 30.3 1.0 N A:SER93 4.5 25.7 1.0 O A:HOH585 4.6 27.4 1.0 N A:VAL117 4.6 19.8 1.0 O A:HOH513 4.6 22.2 1.0 CB A:ASP115 4.6 25.4 1.0 CA A:SER93 4.6 26.7 1.0 C A:ASP115 4.7 21.5 1.0 N A:LEU91 4.7 20.8 1.0 CA A:VAL117 4.9 24.9 1.0 CA A:ASP115 4.9 18.6 1.0 N A:GLY94 5.0 27.5 1.0 CE2 A:TYR69 5.0 19.3 1.0

Sodium binding site 2 out of 2 in the Imine Reductase Rede Bound with Nadp+ and Arcyriaflavin A (Secondary Site)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Imine Reductase Rede Bound with Nadp+ and Arcyriaflavin A (Secondary Site) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na305 b:26.1 occ:1.00 O B:THR92 2.3 25.4 1.0 OD1 B:ASP115 2.4 21.7 1.0 O B:HOH573 2.5 29.1 1.0 O B:GLY116 2.5 21.3 1.0 OH B:TYR69 2.6 27.6 1.0 O B:ASN90 3.2 23.3 1.0 CG B:ASP115 3.4 29.2 1.0 C B:THR92 3.5 28.1 1.0 C B:GLY116 3.6 19.8 1.0 OD2 B:ASP115 3.7 25.3 1.0 CZ B:TYR69 3.8 28.1 1.0 N B:GLY116 3.8 21.1 1.0 N B:THR92 4.0 28.1 1.0 CE1 B:TYR69 4.1 23.7 1.0 O B:HOH466 4.1 29.5 1.0 C B:LEU91 4.1 29.3 1.0 C B:ASN90 4.2 24.2 1.0 CG1 B:VAL117 4.3 19.4 1.0 CA B:GLY116 4.3 21.4 1.0 CA B:LEU91 4.3 23.8 1.0 CA B:THR92 4.4 27.4 1.0 N B:SER93 4.5 26.3 1.0 O B:LEU91 4.5 28.0 1.0 O B:HOH552 4.6 29.4 1.0 CA B:SER93 4.6 24.8 1.0 O B:HOH506 4.6 23.0 1.0 CB B:ASP115 4.6 22.0 1.0 N B:VAL117 4.6 18.4 1.0 N B:LEU91 4.7 24.2 1.0 C B:ASP115 4.7 21.8 1.0 CA B:VAL117 4.9 21.7 1.0 N B:GLY94 4.9 24.6 1.0 CA B:ASP115 4.9 19.7 1.0 CE2 B:TYR69 5.0 31.9 1.0 C B:SER93 5.0 25.4 1.0

P.Daniel-Ivad, K.S.Ryan. An Imine Reductase That Captures Reactive Intermediates in the Biosynthesis of the Indolocarbazole Reductasporine To Be Published.