Sodium in PDB 8tkz: Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4

The structure of Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4, PDB code: 8tkz was solved by A.Jacewicz, A.M.Sanchez, S.Shuman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.42 / 2.06
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	55.109, 91.163, 106.813, 90, 90, 90
R / Rfree (%)	17.4 / 22.7

The structure of Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4 also contains other interesting chemical elements:

Chlorine	(Cl)	2 atoms
Zinc	(Zn)	2 atoms
Cobalt	(Co)	1 atom

The binding sites of Sodium atom in the Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4 (pdb code 8tkz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4, PDB code: 8tkz:

Sodium binding site 1 out of 1 in the Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na507 b:43.8 occ:1.00 O2 B:PO4506 2.1 27.7 1.0 O3 B:PO4506 2.7 39.6 1.0 P B:PO4506 2.8 40.5 1.0 O1 B:PO4506 3.3 40.1 1.0 O B:HOH678 3.3 24.2 1.0 ND2 B:ASN253 3.4 34.7 1.0 CO B:CO505 3.7 23.3 0.8 ND2 B:ASN196 3.8 81.2 1.0 O B:HOH601 4.1 34.5 1.0 CD B:LYS405 4.2 48.2 1.0 OD1 B:ASN253 4.2 26.4 1.0 O4 B:PO4506 4.2 26.8 1.0 CG B:ASN253 4.2 29.6 1.0 CE B:LYS405 4.2 55.5 1.0 ND2 B:ASN252 4.4 28.8 1.0 O B:HOH618 4.7 23.1 1.0 CG B:ASN196 4.8 88.1 1.0 CB B:ASN196 4.9 74.5 1.0 O B:HOH766 4.9 39.6 1.0 NZ B:LYS405 5.0 68.4 1.0

A.Jacewicz, A.M.Sanchez, S.Shuman. Structure of Fission Yeast DUF89 Protein Bound to CO2+ and PO4 To Be Published.