Sodium in PDB 8smh: Chimeric Ets-Domain of Murine Pu.1 Harboring the Corresponding Beta- Strand 3 (S3) Residues From Murine Ets-1 in Complex with D(Aataagcggaagtggg)

The structure of Chimeric Ets-Domain of Murine Pu.1 Harboring the Corresponding Beta- Strand 3 (S3) Residues From Murine Ets-1 in Complex with D(Aataagcggaagtggg), PDB code: 8smh was solved by J.R.Terrell, G.M.K.Poon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.43 / 1.37
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	42.944, 60.71, 45.066, 90, 117.28, 90
R / Rfree (%)	14.3 / 17.7

The binding sites of Sodium atom in the Chimeric Ets-Domain of Murine Pu.1 Harboring the Corresponding Beta- Strand 3 (S3) Residues From Murine Ets-1 in Complex with D(Aataagcggaagtggg) (pdb code 8smh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Chimeric Ets-Domain of Murine Pu.1 Harboring the Corresponding Beta- Strand 3 (S3) Residues From Murine Ets-1 in Complex with D(Aataagcggaagtggg), PDB code: 8smh:

Sodium binding site 1 out of 1 in the Chimeric Ets-Domain of Murine Pu.1 Harboring the Corresponding Beta- Strand 3 (S3) Residues From Murine Ets-1 in Complex with D(Aataagcggaagtggg)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Chimeric Ets-Domain of Murine Pu.1 Harboring the Corresponding Beta- Strand 3 (S3) Residues From Murine Ets-1 in Complex with D(Aataagcggaagtggg) within 5.0Å range: probe atom residue distance (Å) B Occ C:Na101 b:45.4 occ:1.00 OP2 C:DA11 2.2 41.3 1.0 H8 C:DA11 2.5 26.1 1.0 H2'' C:DA10 2.8 44.1 1.0 H2' C:DA10 3.1 44.1 1.0 H2' C:DA11 3.2 29.7 1.0 O5' C:DA11 3.2 33.6 1.0 P C:DA11 3.3 38.5 1.0 C2' C:DA10 3.4 36.8 1.0 C8 C:DA11 3.4 21.8 1.0 H3' C:DA10 3.8 43.4 1.0 C3' C:DA10 4.0 36.1 1.0 O3' C:DA10 4.1 38.3 1.0 C2' C:DA11 4.1 24.8 1.0 N7 C:DA11 4.1 21.2 1.0 N9 C:DA11 4.4 21.1 1.0 O C:HOH207 4.4 33.6 1.0 C5' C:DA11 4.5 31.3 1.0 OP1 C:DA11 4.5 43.2 1.0 H3' C:DA11 4.6 31.8 1.0 O4' C:DA11 4.6 25.5 1.0 C1' C:DA11 4.6 24.1 1.0 H2'' C:DA11 4.7 29.7 1.0 C1' C:DA10 4.8 32.4 1.0 C3' C:DA11 4.8 26.5 1.0 H5' C:DA11 4.8 37.5 1.0 C4' C:DA11 4.9 27.3 1.0

T.N.Vernon, J.R.Terrell, A.L.Schneider, A.V.Albrecht, M.W.Germann, W.D.Wilson, G.M.K.Poon. Dissecting the Hydration and Dynamics of Protein/Dna Readout: Modeling with the Ets-Family Transcription Factor Pu.1 To Be Published.