Atomistry » Sodium » PDB 8rvc-8sp1 » 8slc
Atomistry »
  Sodium »
    PDB 8rvc-8sp1 »
      8slc »

Sodium in PDB 8slc: High Affinity Nanobodies Against Gfp

Protein crystallography data

The structure of High Affinity Nanobodies Against Gfp, PDB code: 8slc was solved by N.E.Ketaren, M.P.Rout, J.B.Bonanno, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.91 / 2.97
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 149.435, 149.435, 127.013, 90, 90, 120
R / Rfree (%) 22 / 24.1

Other elements in 8slc:

The structure of High Affinity Nanobodies Against Gfp also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the High Affinity Nanobodies Against Gfp (pdb code 8slc). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the High Affinity Nanobodies Against Gfp, PDB code: 8slc:

Sodium binding site 1 out of 1 in 8slc

Go back to Sodium Binding Sites List in 8slc
Sodium binding site 1 out of 1 in the High Affinity Nanobodies Against Gfp


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of High Affinity Nanobodies Against Gfp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na303

b:48.2
occ:1.00
HH12 B:ARG168 1.8 80.0 1.0
HH12 A:ARG168 1.9 62.1 1.0
NH1 A:ARG168 2.3 68.0 1.0
NH1 B:ARG168 2.4 79.5 1.0
HH11 A:ARG168 2.5 62.1 1.0
HB3 A:ASN146 2.5 58.0 1.0
HH11 B:ARG168 2.6 80.0 1.0
CG A:ASN146 2.7 59.7 1.0
HB3 B:ASN146 2.8 59.5 1.0
OD1 A:ASN146 2.9 55.3 1.0
CB A:ASN146 3.0 59.8 1.0
ND2 A:ASN146 3.1 62.1 1.0
CG B:ASN146 3.1 58.9 1.0
OD1 B:ASN146 3.2 53.7 1.0
HD22 A:ASN146 3.4 60.8 1.0
HD21 A:ASN146 3.4 60.8 1.0
CZ A:ARG168 3.4 68.0 1.0
CB B:ASN146 3.4 61.3 1.0
HH22 B:ARG168 3.4 64.0 1.0
HB2 A:ASN146 3.4 58.0 1.0
CZ B:ARG168 3.5 75.2 1.0
HH22 A:ARG168 3.6 56.3 1.0
ND2 B:ASN146 3.6 60.9 1.0
NH2 B:ARG168 3.8 66.2 1.0
HB2 B:ASN146 3.8 59.5 1.0
NH2 A:ARG168 3.8 63.2 1.0
HD21 B:ASN146 3.9 59.1 1.0
HD22 B:ASN146 3.9 59.1 1.0
HD2 A:ARG168 4.2 48.1 1.0
HB2 A:ARG168 4.2 57.6 1.0
H A:SER147 4.3 49.9 1.0
H B:SER147 4.3 53.6 1.0
CA A:ASN146 4.4 57.7 1.0
NE A:ARG168 4.4 73.0 1.0
HA A:ASN146 4.4 55.5 1.0
HD2 B:ARG168 4.4 60.2 1.0
HD21 A:ASN170 4.6 74.5 1.0
NE B:ARG168 4.6 75.1 1.0
HA B:ASN146 4.6 55.0 1.0
CA B:ASN146 4.6 57.5 1.0
HH21 B:ARG168 4.6 64.0 1.0
HH21 A:ARG168 4.6 56.3 1.0
HB2 B:ARG168 4.7 56.6 1.0
CD A:ARG168 4.8 56.4 1.0
HD21 B:ASN170 4.9 58.5 1.0
HB3 A:ARG168 4.9 57.6 1.0
CB A:ARG168 5.0 64.3 1.0

Reference:

N.E.Ketaren, M.P.Rout, J.B.Bonanno, S.C.Almo. High Affinity Nanobodies Against Gfp To Be Published.
Page generated: Wed Oct 9 13:31:24 2024

Last articles

Zn in 9FD2
Zn in 9GUW
Zn in 9GUX
Zn in 9F7C
Zn in 9GUR
Zn in 9F7A
Zn in 9DDE
Zn in 9DBY
Zn in 9EBZ
Zn in 9DGG
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy