Sodium in PDB 8s49: Cdaa-B06 Complex

All present enzymatic activity of Cdaa-B06 Complex:
2.7.7.85;

The structure of Cdaa-B06 Complex, PDB code: 8s49 was solved by P.Neumann, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.71 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	41.66, 64.75, 129.06, 90, 90, 90
R / Rfree (%)	19.7 / 22.1

The structure of Cdaa-B06 Complex also contains other interesting chemical elements:

Fluorine

(F)

1 atom

The binding sites of Sodium atom in the Cdaa-B06 Complex (pdb code 8s49). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Cdaa-B06 Complex, PDB code: 8s49:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Cdaa-B06 Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Cdaa-B06 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:37.0 occ:0.87 O A:PHE95 2.3 42.4 1.0 O A:HOH367 2.4 49.4 1.0 O A:HOH339 2.4 40.3 1.0 C A:PHE95 3.2 45.0 1.0 N A:SER97 3.7 38.5 1.0 CA A:PHE95 3.9 40.7 1.0 CA A:SER97 3.9 41.4 1.0 C A:LEU96 4.0 45.1 1.0 N A:LEU96 4.2 37.4 1.0 O A:LEU96 4.4 47.2 1.0 CA A:LEU96 4.4 34.8 1.0 CB A:SER97 4.5 53.3 1.0 O A:PRO94 4.6 48.4 1.0 CB A:PHE95 4.7 42.2 1.0

Sodium binding site 2 out of 2 in the Cdaa-B06 Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Cdaa-B06 Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:57.1 occ:1.00 O A:LEU136 2.3 42.9 1.0 O A:HOH366 3.0 52.7 1.0 O A:HOH342 3.2 51.0 1.0 C A:LEU136 3.5 42.6 1.0 N A:LEU136 4.4 38.0 1.0 N A:PHE137 4.4 35.2 1.0 CA A:PHE137 4.4 39.2 1.0 CA A:LEU136 4.5 42.3 1.0 CB A:LEU136 5.0 44.3 1.0

P.Neumann, R.Ficner. Cdaa-B06 Complex To Be Published.