Sodium in PDB 8rt2: Hen Egg White Lysozyme Crystallized with Bioassembler on Earth

All present enzymatic activity of Hen Egg White Lysozyme Crystallized with Bioassembler on Earth:
3.2.1.17;

The structure of Hen Egg White Lysozyme Crystallized with Bioassembler on Earth, PDB code: 8rt2 was solved by C.Maccarthy, E.V.Koudan, S.V.Petrov, A.A.Levin, Y.D.Khesuani, V.Borshchevskiy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.73 / 0.80
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	77.03, 77.03, 38.97, 90, 90, 90
R / Rfree (%)	12.1 / 13.3

The structure of Hen Egg White Lysozyme Crystallized with Bioassembler on Earth also contains other interesting chemical elements:

Gadolinium	(Gd)	4 atoms
Chlorine	(Cl)	7 atoms

The binding sites of Sodium atom in the Hen Egg White Lysozyme Crystallized with Bioassembler on Earth (pdb code 8rt2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hen Egg White Lysozyme Crystallized with Bioassembler on Earth, PDB code: 8rt2:

Sodium binding site 1 out of 1 in the Hen Egg White Lysozyme Crystallized with Bioassembler on Earth


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hen Egg White Lysozyme Crystallized with Bioassembler on Earth within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1012 b:10.4 occ:1.00 O A:SER60 2.3 10.2 1.0 O A:CYS64 2.4 9.4 1.0 O A:ARG73 2.4 11.9 1.0 O A:HOH1269 2.4 13.0 1.0 O A:HOH1232 2.4 10.7 1.0 OG A:SER72 2.4 12.1 1.0 HA A:ASN65 3.0 12.4 1.0 HB2 A:SER72 3.0 14.0 1.0 CB A:SER72 3.3 12.0 1.0 C A:SER60 3.5 8.9 1.0 C A:ARG73 3.5 11.7 1.0 HB2 A:SER60 3.5 11.5 1.0 C A:CYS64 3.5 9.1 1.0 HA A:SER60 3.8 11.5 1.0 HB A:THR69 3.8 12.5 1.0 H A:ARG73 3.9 13.9 1.0 N A:ARG73 3.9 12.4 1.0 CA A:ASN65 3.9 9.6 1.0 H A:CYS64 3.9 12.2 1.0 HB3 A:SER72 3.9 14.0 1.0 H A:ASP66 3.9 12.1 1.0 HB2 A:ASN74 4.0 13.7 1.0 CA A:SER60 4.0 8.4 1.0 C A:SER72 4.1 12.6 1.0 N A:ASN65 4.1 9.4 1.0 HA A:ASN74 4.1 13.5 1.0 CB A:SER60 4.2 8.9 1.0 CA A:ARG73 4.3 13.1 0.7 CA A:ARG73 4.3 13.8 0.3 CA A:SER72 4.3 12.6 1.0 N A:ASN74 4.4 11.8 1.0 N A:CYS64 4.4 9.6 1.0 C A:ARG61 4.5 10.3 1.0 O A:ARG61 4.5 11.9 1.0 N A:ARG61 4.6 9.3 1.0 O A:HOH1303 4.6 27.9 1.0 CA A:ASN74 4.6 10.7 1.0 HA A:ARG61 4.6 13.9 1.0 N A:ASP66 4.6 9.2 1.0 HB2 A:ASN65 4.6 13.6 1.0 CA A:CYS64 4.6 9.3 1.0 OD1 A:ASN65 4.7 13.2 1.0 O A:SER72 4.7 14.5 1.0 CB A:THR69 4.7 10.1 1.0 HA A:ARG73 4.7 14.4 1.0 CB A:ASN74 4.7 11.5 1.0 CL A:CL1007 4.8 12.6 0.7 C A:ASN65 4.8 8.9 1.0 CA A:ARG61 4.8 11.2 0.7 H A:TRP63 4.8 11.6 1.0 CB A:ASN65 4.8 11.1 1.0 HG22 A:THR69 4.8 12.6 1.0 CA A:ARG61 4.8 12.2 0.3 N A:TRP62 4.9 9.6 1.0 HG A:SER60 4.9 11.7 1.0 HB3 A:SER60 4.9 11.5 1.0 O A:HOH1306 4.9 33.8 1.0 H A:ASN65 4.9 12.3 1.0 HA A:SER72 5.0 14.2 1.0 O A:THR69 5.0 10.7 1.0

C.Maccarthy, E.V.Koudan, S.V.Petrov, A.A.Levin, Y.D.Khesuani, V.Borshchevskiy. Hen Egg White Lysozyme Crystallized with Bioassembler on Earth To Be Published.