Sodium in PDB 8rsh: Lysozyme Measured Via Serial Crystallography From A Silicon Hare Chip

All present enzymatic activity of Lysozyme Measured Via Serial Crystallography From A Silicon Hare Chip:
3.2.1.17;

The structure of Lysozyme Measured Via Serial Crystallography From A Silicon Hare Chip, PDB code: 8rsh was solved by R.Bosman, A.Prester, L.Von Soosten, S.Dibenedetto, K.Bartels, S.Sung, D.Vonstetten, P.Mehrabi, E.C.Schulz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.86 / 1.70
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	79, 79, 38, 90, 90, 90
R / Rfree (%)	18.6 / 18.8

The structure of Lysozyme Measured Via Serial Crystallography From A Silicon Hare Chip also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Lysozyme Measured Via Serial Crystallography From A Silicon Hare Chip (pdb code 8rsh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Lysozyme Measured Via Serial Crystallography From A Silicon Hare Chip, PDB code: 8rsh:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Lysozyme Measured Via Serial Crystallography From A Silicon Hare Chip


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Lysozyme Measured Via Serial Crystallography From A Silicon Hare Chip within 5.0Å range: probe atom residue distance (Å) B Occ A:Na203 b:18.2 occ:1.00 OD2 A:ASP66 2.7 11.5 1.0 OG1 A:THR51 2.7 10.5 1.0 NE A:ARG68 2.9 18.5 1.0 O A:GLY49 2.9 19.2 1.0 OG1 A:THR69 3.1 12.9 1.0 N A:THR51 3.4 10.0 1.0 CB A:THR51 3.4 9.7 1.0 CG A:ARG68 3.5 15.3 1.0 C A:SER50 3.6 11.4 1.0 CG A:ASP66 3.6 11.7 1.0 NE A:ARG45 3.7 28.0 1.0 CD A:ARG68 3.7 16.5 1.0 OG A:SER60 3.7 11.1 1.0 CA A:SER50 3.8 12.9 1.0 OD1 A:ASP66 3.8 12.8 1.0 CZ A:ARG68 3.9 17.1 1.0 NH2 A:ARG68 4.0 15.0 1.0 C A:GLY49 4.0 18.9 1.0 CA A:THR51 4.0 9.4 1.0 NH2 A:ARG45 4.0 26.8 1.0 CZ A:ARG45 4.2 28.5 1.0 O A:SER50 4.2 14.6 1.0 OH A:TYR53 4.3 10.9 1.0 O A:ARG68 4.3 20.6 1.0 N A:SER50 4.4 13.3 1.0 CD A:ARG45 4.4 20.8 1.0 CB A:THR69 4.4 13.2 1.0 C A:ARG68 4.5 17.5 1.0 CB A:SER60 4.6 11.9 1.0 CB A:ARG68 4.7 14.8 1.0 N A:THR69 4.7 15.4 1.0 CG2 A:THR51 4.8 9.7 1.0 CA A:THR69 4.8 14.4 1.0 CB A:ASP66 4.9 11.5 1.0 CG2 A:THR69 5.0 18.6 1.0

Sodium binding site 2 out of 2 in the Lysozyme Measured Via Serial Crystallography From A Silicon Hare Chip


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Lysozyme Measured Via Serial Crystallography From A Silicon Hare Chip within 5.0Å range: probe atom residue distance (Å) B Occ A:Na204 b:18.5 occ:1.00 OG1 A:THR43 2.8 11.3 1.0 O A:GLN41 2.8 11.0 1.0 N A:THR43 3.2 9.1 1.0 CB A:THR43 3.6 10.5 1.0 CG2 A:THR43 3.7 12.1 1.0 C A:ALA42 3.8 8.1 1.0 C A:GLN41 3.9 10.8 1.0 CA A:THR43 3.9 8.5 1.0 CA A:ALA42 4.0 9.7 1.0 O A:THR43 4.4 13.6 1.0 N A:ALA42 4.4 8.5 1.0 C A:THR43 4.6 8.9 1.0 O A:ALA42 4.7 8.3 1.0

R.Bosman, A.Prester, L.Von Soosten, S.Dibenedetto, K.Bartels, S.Sung, D.Von Stetten, P.Mehrabi, G.Blatter, G.Lu, S.Bernhard, M.Osbild, E.C.Schulz. Kapton-Based Hare Chips For Fixed-Target Serial Crystallography To Be Published.