Sodium in PDB 8rpm: Lysozyme Structure Based on Automated Real-Time Serial Crystallography Data Processing Using Crystfel

Enzymatic activity of Lysozyme Structure Based on Automated Real-Time Serial Crystallography Data Processing Using Crystfel

All present enzymatic activity of Lysozyme Structure Based on Automated Real-Time Serial Crystallography Data Processing Using Crystfel:
3.2.1.17;

Protein crystallography data

The structure of Lysozyme Structure Based on Automated Real-Time Serial Crystallography Data Processing Using Crystfel, PDB code: 8rpm was solved by T.A.White, D.Oberthuer, A.Henkel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.00 / 1.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.2, 79.2, 38, 90, 90, 90
R / Rfree (%) 18.5 / 22.2

Other elements in 8rpm:

The structure of Lysozyme Structure Based on Automated Real-Time Serial Crystallography Data Processing Using Crystfel also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Lysozyme Structure Based on Automated Real-Time Serial Crystallography Data Processing Using Crystfel (pdb code 8rpm). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Lysozyme Structure Based on Automated Real-Time Serial Crystallography Data Processing Using Crystfel, PDB code: 8rpm:

Sodium binding site 1 out of 1 in 8rpm

Go back to Sodium Binding Sites List in 8rpm
Sodium binding site 1 out of 1 in the Lysozyme Structure Based on Automated Real-Time Serial Crystallography Data Processing Using Crystfel


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Lysozyme Structure Based on Automated Real-Time Serial Crystallography Data Processing Using Crystfel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na203

b:53.9
occ:1.00
 N A:ILE88 3.4 28.9 1.0
OD1 A:ASP87 3.7 42.8 1.0
CG1 A:ILE88 3.7 32.9 1.0
CA A:ASP87 3.9 39.5 1.0
NE2 A:HIS15 3.9 42.2 1.0
C A:ASP87 4.1 37.6 1.0
CG A:ASP87 4.2 44.8 1.0
O A:SER86 4.4 40.0 1.0
CB A:ILE88 4.4 29.0 1.0
CA A:ILE88 4.4 28.5 1.0
CD2 A:HIS15 4.5 40.1 1.0
CB A:ASP87 4.5 41.1 1.0
CB A:ALA11 4.6 35.8 1.0
CG2 A:ILE88 4.6 37.5 1.0
CD1 A:ILE88 4.7 35.9 1.0
CZ A:PHE3 4.8 34.2 1.0
N A:THR89 4.9 26.2 1.0
N A:ASP87 4.9 37.1 1.0
CE1 A:HIS15 5.0 42.2 1.0

Reference:

T.A.White, D.Oberthuer, A.Henkel. Real-Time Data Processing For Serial Crystallography Experiments To Be Published.
Page generated: Wed Oct 9 13:22:20 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy