Sodium in PDB 8rnw: Hen Egg White Lysozyme Soaked with Trans-Ru(Dmso)4CL2

All present enzymatic activity of Hen Egg White Lysozyme Soaked with Trans-Ru(Dmso)4CL2:
3.2.1.17;

The structure of Hen Egg White Lysozyme Soaked with Trans-Ru(Dmso)4CL2, PDB code: 8rnw was solved by M.Oszajca, M.Flejszar, A.Szura, P.Drozdz, M.Brindell, K.Kurpiewska, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.97 / 1.12
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.207, 78.207, 37.195, 90, 90, 90
R / Rfree (%)	15.6 / 17.1

The structure of Hen Egg White Lysozyme Soaked with Trans-Ru(Dmso)4CL2 also contains other interesting chemical elements:

Chlorine	(Cl)	4 atoms
Ruthenium	(Ru)	2 atoms

The binding sites of Sodium atom in the Hen Egg White Lysozyme Soaked with Trans-Ru(Dmso)4CL2 (pdb code 8rnw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hen Egg White Lysozyme Soaked with Trans-Ru(Dmso)4CL2, PDB code: 8rnw:

Sodium binding site 1 out of 1 in the Hen Egg White Lysozyme Soaked with Trans-Ru(Dmso)4CL2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hen Egg White Lysozyme Soaked with Trans-Ru(Dmso)4CL2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na208 b:18.6 occ:0.69 O A:SER60 2.2 21.4 1.0 O A:HOH405 2.3 24.8 1.0 O A:HOH374 2.4 19.2 1.0 O A:ARG73 2.4 26.6 1.0 OG A:SER72 2.5 29.5 1.0 O A:CYS64 2.5 18.1 1.0 CB A:SER72 3.1 29.0 1.0 C A:SER60 3.4 19.5 1.0 C A:ARG73 3.5 25.2 1.0 C A:CYS64 3.6 17.0 1.0 N A:ARG73 3.9 27.7 1.0 CA A:ASN65 4.0 17.9 1.0 CA A:SER60 4.0 17.2 1.0 C A:SER72 4.1 28.9 1.0 N A:ASN65 4.2 17.5 1.0 CB A:SER60 4.3 17.8 1.0 CA A:SER72 4.3 29.1 1.0 CA A:ARG73 4.3 26.3 1.0 N A:ASN74 4.4 24.9 1.0 N A:ARG61 4.5 19.8 1.0 C A:ARG61 4.5 22.7 1.0 O A:ARG61 4.5 24.2 1.0 N A:CYS64 4.5 18.0 1.0 CA A:ASN74 4.6 22.8 1.0 CB A:THR69 4.6 18.5 1.0 CA A:ARG61 4.7 22.7 1.0 N A:ASP66 4.7 15.6 1.0 CL A:CL207 4.7 21.4 0.7 CA A:CYS64 4.7 17.4 1.0 OD1 A:ASN65 4.7 22.4 1.0 N A:TRP62 4.8 21.3 1.0 CB A:ASN74 4.8 22.7 1.0 O A:SER72 4.8 29.7 1.0 CB A:ASN65 4.9 19.5 1.0 C A:ASN65 4.9 15.9 1.0 O A:THR69 4.9 21.2 1.0

M.Oszajca, M.Flejszar, A.Szura, P.Drozdz, M.Brindell, K.Kurpiewska. Exploring the Coordination Chemistry of Ruthenium Complexes with Lysozymes: Structural and in Solution Studies To Be Published.