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Sodium in PDB 8rge: Serial Synchrotron in Plate Room Temperature Structure of Lysozyme.

Enzymatic activity of Serial Synchrotron in Plate Room Temperature Structure of Lysozyme.

All present enzymatic activity of Serial Synchrotron in Plate Room Temperature Structure of Lysozyme.:
3.2.1.17;

Protein crystallography data

The structure of Serial Synchrotron in Plate Room Temperature Structure of Lysozyme., PDB code: 8rge was solved by A.J.Thompson, H.A.Hough, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.56 / 1.88
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.573, 78.573, 37.768, 90, 90, 90
R / Rfree (%) 19.3 / 23.1

Other elements in 8rge:

The structure of Serial Synchrotron in Plate Room Temperature Structure of Lysozyme. also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Serial Synchrotron in Plate Room Temperature Structure of Lysozyme. (pdb code 8rge). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Serial Synchrotron in Plate Room Temperature Structure of Lysozyme., PDB code: 8rge:

Sodium binding site 1 out of 1 in 8rge

Go back to Sodium Binding Sites List in 8rge
Sodium binding site 1 out of 1 in the Serial Synchrotron in Plate Room Temperature Structure of Lysozyme.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Serial Synchrotron in Plate Room Temperature Structure of Lysozyme. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:29.8
occ:1.00
 O A:SER60 2.3 29.4 1.0
O A:CYS64 2.4 27.9 1.0
O A:ARG73 2.5 31.3 1.0
O A:HOH371 2.5 35.7 1.0
O A:HOH331 2.6 32.7 1.0
OG A:SER72 2.6 37.3 1.0
CB A:SER72 3.3 32.2 1.0
C A:CYS64 3.4 25.4 1.0
C A:SER60 3.4 27.2 1.0
C A:ARG73 3.6 40.1 1.0
CA A:ASN65 3.9 32.3 1.0
N A:ASN65 4.0 23.7 1.0
N A:ARG73 4.1 32.9 1.0
C A:SER72 4.1 45.2 1.0
CA A:SER60 4.1 25.6 1.0
N A:CYS64 4.3 23.6 1.0
CA A:SER72 4.3 34.8 1.0
CB A:SER60 4.4 29.5 1.0
C A:ARG61 4.4 33.5 0.5
N A:ASN74 4.4 37.9 1.0
C A:ARG61 4.4 33.5 0.5
CA A:CYS64 4.5 19.2 1.0
O A:ARG61 4.5 33.6 0.5
CA A:ARG73 4.5 34.1 1.0
N A:ARG61 4.5 27.9 0.5
N A:ARG61 4.5 27.9 0.5
O A:SER72 4.5 33.9 1.0
O A:ARG61 4.5 33.6 0.5
CA A:ASN74 4.6 31.6 1.0
CA A:ARG61 4.7 33.8 0.5
CA A:ARG61 4.7 33.8 0.5
N A:TRP62 4.7 28.7 1.0
CB A:THR69 4.7 34.3 1.0
N A:ASP66 4.8 29.4 1.0
CB A:ASN74 4.8 29.4 1.0
CB A:ASN65 4.8 33.1 1.0
C A:ASN65 4.9 25.4 1.0
O A:HOH366 4.9 30.9 1.0
OD1 A:ASN65 4.9 39.4 1.0
N A:TRP63 4.9 28.4 1.0
C A:TRP62 4.9 28.3 1.0

Reference:

A.J.Thompson, H.A.Hough. Efficient in Situ Screening of and Data Collection From Microcrystals in Crystallisation Plates To Be Published.
Page generated: Wed Oct 9 13:20:33 2024

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