Sodium in PDB 8qtg: Crystal Structure of Cbl-B in Complex with An Allosteric Inhibitor (Compound 9)

The structure of Crystal Structure of Cbl-B in Complex with An Allosteric Inhibitor (Compound 9), PDB code: 8qtg was solved by M.Schimpl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	16.30 / 1.42
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	57.641, 74.538, 97.802, 90, 90, 90
R / Rfree (%)	20.7 / 24.3

The structure of Crystal Structure of Cbl-B in Complex with An Allosteric Inhibitor (Compound 9) also contains other interesting chemical elements:

Fluorine	(F)	3 atoms
Zinc	(Zn)	2 atoms

The binding sites of Sodium atom in the Crystal Structure of Cbl-B in Complex with An Allosteric Inhibitor (Compound 9) (pdb code 8qtg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Cbl-B in Complex with An Allosteric Inhibitor (Compound 9), PDB code: 8qtg:

Sodium binding site 1 out of 1 in the Crystal Structure of Cbl-B in Complex with An Allosteric Inhibitor (Compound 9)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Cbl-B in Complex with An Allosteric Inhibitor (Compound 9) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na504 b:13.4 occ:1.00 OD1 A:ASP221 2.3 14.6 1.0 O A:TYR227 2.4 13.8 1.0 OD1 A:ASN225 2.4 15.8 1.0 OE2 A:GLU232 2.4 14.3 1.0 OG1 A:THR223 2.5 15.4 1.0 OE1 A:GLU232 2.6 19.3 1.0 CD A:GLU232 2.8 15.9 1.0 O A:HOH744 3.0 21.4 1.0 CG A:ASP221 3.3 15.3 1.0 CG A:ASN225 3.4 15.2 1.0 C A:TYR227 3.5 13.9 1.0 CB A:THR223 3.8 14.1 1.0 CA A:ASP221 3.9 11.2 1.0 ND2 A:ASN225 3.9 13.8 1.0 N A:THR223 3.9 12.7 1.0 CB A:ASP221 4.0 11.1 1.0 N A:ASN225 4.1 13.8 1.0 N A:TYR227 4.2 13.1 1.0 CA A:THR223 4.2 13.0 1.0 C A:ASP221 4.2 12.1 1.0 N A:CYS224 4.2 14.2 1.0 OD2 A:ASP221 4.2 15.4 1.0 CA A:TYR227 4.3 14.2 1.0 CG A:GLU232 4.4 14.3 1.0 C A:THR223 4.4 14.2 1.0 N A:ILE228 4.4 12.7 1.0 CG2 A:THR223 4.4 13.0 1.0 N A:LEU222 4.4 11.7 1.0 CA A:ILE228 4.5 11.9 1.0 CB A:ASN225 4.5 13.2 1.0 CB A:TYR227 4.6 15.2 1.0 CA A:ASN225 4.7 14.1 1.0 O A:ASP221 4.8 12.6 1.0 N A:ASP226 4.8 14.7 1.0 N A:SER229 4.9 12.9 1.0 CD1 A:ILE228 4.9 14.5 1.0 C A:ASN225 4.9 14.9 1.0 C A:LEU222 5.0 12.7 1.0

A.M.Mfuh, M.Schimpl. N/A N/A.