Sodium in PDB 8qtf: Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1.
Protein crystallography data
The structure of Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1., PDB code: 8qtf
was solved by
M.Hothorn,
E.Obergfell,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
59.91 /
1.90
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
71.641,
71.917,
151.662,
100.25,
94.84,
89.23
|
R / Rfree (%)
|
19.5 /
23
|
Other elements in 8qtf:
The structure of Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1. also contains other interesting chemical elements:
Sodium Binding Sites:
The binding sites of Sodium atom in the Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1.
(pdb code 8qtf). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 10 binding sites of Sodium where determined in the
Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1., PDB code: 8qtf:
Jump to Sodium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Sodium binding site 1 out
of 10 in 8qtf
Go back to
Sodium Binding Sites List in 8qtf
Sodium binding site 1 out
of 10 in the Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1.
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na1201
b:56.4
occ:1.00
|
O
|
B:LEU111
|
2.4
|
43.4
|
1.0
|
HB3
|
B:ALA114
|
2.6
|
67.3
|
1.0
|
O
|
B:HOH1338
|
2.8
|
50.3
|
1.0
|
HG2
|
B:GLU39
|
2.9
|
78.7
|
1.0
|
HA
|
B:ALA115
|
3.0
|
62.8
|
1.0
|
HA
|
B:LEU111
|
3.0
|
51.4
|
1.0
|
N
|
B:ALA115
|
3.0
|
48.5
|
1.0
|
O
|
B:HOH1301
|
3.1
|
55.0
|
1.0
|
H
|
B:ALA115
|
3.2
|
58.2
|
1.0
|
C
|
B:ALA114
|
3.2
|
51.1
|
1.0
|
C
|
B:LEU111
|
3.3
|
45.1
|
1.0
|
HB2
|
B:ALA115
|
3.4
|
54.9
|
1.0
|
CB
|
B:ALA114
|
3.4
|
56.1
|
1.0
|
HE2
|
B:TYR124
|
3.4
|
53.2
|
1.0
|
CA
|
B:ALA115
|
3.5
|
52.3
|
1.0
|
HA
|
B:GLU39
|
3.5
|
73.7
|
1.0
|
HB1
|
B:ALA114
|
3.7
|
67.3
|
1.0
|
CA
|
B:LEU111
|
3.7
|
42.8
|
1.0
|
H
|
B:ALA114
|
3.7
|
63.0
|
1.0
|
O
|
B:ALA114
|
3.7
|
49.3
|
1.0
|
CA
|
B:ALA114
|
3.8
|
53.4
|
1.0
|
CE2
|
B:TYR124
|
3.8
|
44.3
|
1.0
|
CG
|
B:GLU39
|
3.9
|
65.6
|
1.0
|
CB
|
B:ALA115
|
4.0
|
45.7
|
1.0
|
HB3
|
B:LEU111
|
4.1
|
48.0
|
1.0
|
N
|
B:ALA114
|
4.1
|
52.5
|
1.0
|
HB3
|
B:GLU39
|
4.1
|
74.9
|
1.0
|
OE2
|
B:GLU39
|
4.2
|
66.7
|
1.0
|
O
|
B:ARG110
|
4.2
|
48.2
|
1.0
|
HB2
|
B:ALA114
|
4.2
|
67.3
|
1.0
|
H
|
B:LEU40
|
4.2
|
59.0
|
1.0
|
CD2
|
B:TYR124
|
4.3
|
39.9
|
1.0
|
HD2
|
B:TYR124
|
4.3
|
47.9
|
1.0
|
HH
|
B:TYR124
|
4.3
|
54.3
|
1.0
|
CB
|
B:GLU39
|
4.3
|
62.4
|
1.0
|
CA
|
B:GLU39
|
4.3
|
61.4
|
1.0
|
HD22
|
B:LEU111
|
4.4
|
49.0
|
1.0
|
CZ
|
B:TYR124
|
4.4
|
42.6
|
1.0
|
HG3
|
B:GLU39
|
4.4
|
78.7
|
1.0
|
CB
|
B:LEU111
|
4.5
|
40.0
|
1.0
|
HD23
|
B:LEU111
|
4.5
|
49.0
|
1.0
|
N
|
B:ILE112
|
4.6
|
43.4
|
1.0
|
HB1
|
B:ALA115
|
4.6
|
54.9
|
1.0
|
CD
|
B:GLU39
|
4.6
|
69.8
|
1.0
|
HB3
|
B:ALA115
|
4.6
|
54.9
|
1.0
|
HB3
|
B:SER120
|
4.6
|
58.4
|
1.0
|
OH
|
B:TYR124
|
4.6
|
45.2
|
1.0
|
HA
|
B:ALA114
|
4.7
|
64.1
|
1.0
|
O
|
B:ASP38
|
4.7
|
75.3
|
1.0
|
HA
|
B:ILE112
|
4.8
|
51.2
|
1.0
|
O
|
B:HOH1339
|
4.8
|
46.1
|
1.0
|
N
|
B:LEU111
|
4.8
|
43.6
|
1.0
|
C
|
B:ALA115
|
4.8
|
52.7
|
1.0
|
CD2
|
B:LEU111
|
4.9
|
40.8
|
1.0
|
N
|
B:LEU40
|
4.9
|
49.1
|
1.0
|
C
|
B:ARG110
|
4.9
|
46.9
|
1.0
|
O
|
B:ILE112
|
5.0
|
49.2
|
1.0
|
H
|
B:ALA116
|
5.0
|
59.2
|
1.0
|
|
Sodium binding site 2 out
of 10 in 8qtf
Go back to
Sodium Binding Sites List in 8qtf
Sodium binding site 2 out
of 10 in the Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1.
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na1202
b:57.7
occ:1.00
|
OE2
|
B:GLU44
|
2.4
|
48.9
|
1.0
|
O
|
B:HOH1308
|
2.7
|
50.7
|
1.0
|
HG3
|
B:ARG5
|
3.0
|
64.1
|
1.0
|
HG21
|
B:VAL9
|
3.0
|
61.0
|
1.0
|
HE
|
B:ARG5
|
3.2
|
65.8
|
1.0
|
CD
|
B:GLU44
|
3.3
|
52.4
|
1.0
|
HG3
|
B:GLU44
|
3.4
|
52.7
|
1.0
|
HB2
|
B:ARG5
|
3.6
|
56.7
|
1.0
|
CG
|
B:GLU44
|
3.7
|
43.9
|
1.0
|
CG
|
B:ARG5
|
3.8
|
53.4
|
1.0
|
HG2
|
B:GLU44
|
3.8
|
52.7
|
1.0
|
HG1
|
B:THR41
|
3.8
|
55.4
|
1.0
|
NE
|
B:ARG5
|
3.9
|
54.8
|
1.0
|
HG21
|
B:THR41
|
3.9
|
62.8
|
1.0
|
CG2
|
B:VAL9
|
3.9
|
50.8
|
1.0
|
HG3
|
B:GLU6
|
4.0
|
86.9
|
1.0
|
HG23
|
B:THR41
|
4.1
|
62.8
|
1.0
|
HG11
|
B:VAL9
|
4.1
|
59.1
|
1.0
|
HA
|
B:GLU6
|
4.1
|
69.1
|
1.0
|
HG23
|
B:VAL9
|
4.2
|
61.0
|
1.0
|
CB
|
B:ARG5
|
4.2
|
47.2
|
1.0
|
CD
|
B:ARG5
|
4.3
|
57.2
|
1.0
|
OE1
|
B:GLU44
|
4.3
|
52.4
|
1.0
|
HB
|
B:VAL9
|
4.4
|
63.2
|
1.0
|
OG1
|
B:THR41
|
4.4
|
46.2
|
1.0
|
HD3
|
B:ARG5
|
4.4
|
68.7
|
1.0
|
CG2
|
B:THR41
|
4.4
|
52.3
|
1.0
|
HH21
|
B:ARG5
|
4.4
|
66.3
|
1.0
|
HG22
|
B:VAL9
|
4.5
|
61.0
|
1.0
|
HG2
|
B:ARG5
|
4.5
|
64.1
|
1.0
|
CB
|
B:VAL9
|
4.6
|
52.6
|
1.0
|
O
|
B:ARG5
|
4.6
|
49.0
|
1.0
|
C
|
B:ARG5
|
4.6
|
53.1
|
1.0
|
OE1
|
B:GLU43
|
4.8
|
52.8
|
1.0
|
N
|
B:GLU6
|
4.8
|
52.0
|
1.0
|
CZ
|
B:ARG5
|
4.8
|
52.6
|
1.0
|
CG1
|
B:VAL9
|
4.8
|
49.3
|
1.0
|
CA
|
B:GLU6
|
4.9
|
57.5
|
1.0
|
CG
|
B:GLU6
|
4.9
|
72.4
|
1.0
|
HB3
|
B:ARG5
|
4.9
|
56.7
|
1.0
|
NH2
|
B:ARG5
|
4.9
|
55.2
|
1.0
|
|
Sodium binding site 3 out
of 10 in 8qtf
Go back to
Sodium Binding Sites List in 8qtf
Sodium binding site 3 out
of 10 in the Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1.
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 3 of Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na1203
b:60.4
occ:1.00
|
OE2
|
B:GLU29
|
2.4
|
65.2
|
1.0
|
HG
|
B:LEU106
|
2.9
|
61.7
|
1.0
|
O
|
B:GLY102
|
2.9
|
38.1
|
1.0
|
HA2
|
B:GLY102
|
3.0
|
53.4
|
1.0
|
CD
|
B:GLU29
|
3.3
|
70.6
|
1.0
|
OE1
|
B:GLU29
|
3.5
|
69.5
|
1.0
|
HD21
|
B:LEU106
|
3.5
|
60.4
|
1.0
|
C
|
B:GLY102
|
3.5
|
37.1
|
1.0
|
CA
|
B:GLY102
|
3.6
|
44.5
|
1.0
|
HB2
|
B:LYS105
|
3.6
|
55.6
|
1.0
|
HA3
|
B:GLY102
|
3.7
|
53.4
|
1.0
|
CG
|
B:LEU106
|
3.7
|
51.4
|
1.0
|
HD23
|
B:LEU106
|
3.9
|
60.4
|
1.0
|
HH
|
B:TYR52
|
3.9
|
49.6
|
1.0
|
CD2
|
B:LEU106
|
3.9
|
50.3
|
1.0
|
HD11
|
B:LEU106
|
4.0
|
59.3
|
1.0
|
H
|
B:LEU106
|
4.1
|
45.5
|
1.0
|
OH
|
B:TYR52
|
4.2
|
41.3
|
1.0
|
CD1
|
B:LEU106
|
4.3
|
49.4
|
1.0
|
CB
|
B:LYS105
|
4.5
|
46.3
|
1.0
|
HD12
|
B:LEU106
|
4.5
|
59.3
|
1.0
|
CG
|
B:GLU29
|
4.7
|
55.2
|
1.0
|
N
|
B:LEU106
|
4.7
|
37.9
|
1.0
|
N
|
B:ILE103
|
4.7
|
32.9
|
1.0
|
HG2
|
B:GLU29
|
4.8
|
66.2
|
1.0
|
HB3
|
B:LYS105
|
4.8
|
55.6
|
1.0
|
HB3
|
B:GLU29
|
4.8
|
60.6
|
1.0
|
HA
|
B:ILE103
|
4.8
|
45.5
|
1.0
|
O
|
B:HOH1372
|
4.9
|
55.5
|
1.0
|
HD22
|
B:LEU106
|
4.9
|
60.4
|
1.0
|
CB
|
B:LEU106
|
4.9
|
40.6
|
1.0
|
N
|
B:GLY102
|
4.9
|
43.5
|
1.0
|
HG3
|
B:LYS105
|
5.0
|
70.9
|
1.0
|
O
|
B:HOH1362
|
5.0
|
62.0
|
1.0
|
|
Sodium binding site 4 out
of 10 in 8qtf
Go back to
Sodium Binding Sites List in 8qtf
Sodium binding site 4 out
of 10 in the Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1.
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 4 of Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Na1202
b:61.0
occ:1.00
|
HG
|
C:SER120
|
2.5
|
55.9
|
1.0
|
OE2
|
C:GLU39
|
2.6
|
52.3
|
1.0
|
HB3
|
C:SER117
|
2.6
|
55.9
|
1.0
|
H
|
C:SER117
|
2.7
|
55.9
|
1.0
|
HG
|
C:SER117
|
2.9
|
54.6
|
1.0
|
OG
|
C:SER117
|
2.9
|
45.5
|
1.0
|
OG
|
C:SER120
|
3.1
|
46.6
|
1.0
|
CB
|
C:SER117
|
3.2
|
46.5
|
1.0
|
HB3
|
C:ALA116
|
3.2
|
61.2
|
1.0
|
N
|
C:SER117
|
3.3
|
46.6
|
1.0
|
H
|
C:ALA116
|
3.5
|
56.3
|
1.0
|
CD
|
C:GLU39
|
3.6
|
54.8
|
1.0
|
HB2
|
C:SER120
|
3.8
|
45.9
|
1.0
|
CA
|
C:SER117
|
3.9
|
44.5
|
1.0
|
O
|
C:HOH1340
|
4.0
|
58.3
|
1.0
|
HB2
|
C:SER117
|
4.0
|
55.9
|
1.0
|
CB
|
C:SER120
|
4.0
|
38.2
|
1.0
|
OE1
|
C:GLU39
|
4.0
|
47.7
|
1.0
|
CB
|
C:ALA116
|
4.1
|
51.0
|
1.0
|
N
|
C:ALA116
|
4.2
|
46.9
|
1.0
|
C
|
C:ALA116
|
4.2
|
51.6
|
1.0
|
CA
|
C:ALA116
|
4.4
|
53.5
|
1.0
|
HB3
|
C:SER120
|
4.4
|
45.9
|
1.0
|
H
|
C:SER120
|
4.5
|
44.1
|
1.0
|
HA
|
C:SER117
|
4.5
|
53.4
|
1.0
|
HB1
|
C:ALA116
|
4.6
|
61.2
|
1.0
|
HB2
|
C:ALA116
|
4.7
|
61.2
|
1.0
|
HG3
|
C:GLU39
|
4.8
|
65.0
|
1.0
|
CG
|
C:GLU39
|
4.8
|
54.1
|
1.0
|
HH12
|
C:ARG45
|
4.8
|
39.4
|
0.6
|
C
|
C:SER117
|
4.9
|
43.7
|
1.0
|
|
Sodium binding site 5 out
of 10 in 8qtf
Go back to
Sodium Binding Sites List in 8qtf
Sodium binding site 5 out
of 10 in the Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1.
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 5 of Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Na1203
b:70.7
occ:1.00
|
O
|
E:GLY141
|
2.7
|
64.8
|
1.0
|
HA2
|
E:GLY141
|
2.8
|
78.4
|
1.0
|
HG3
|
E:LYS145
|
3.0
|
76.9
|
1.0
|
HB3
|
E:ARG144
|
3.1
|
57.4
|
1.0
|
H
|
E:GLY141
|
3.2
|
71.4
|
1.0
|
CA
|
E:GLY141
|
3.3
|
65.3
|
1.0
|
C
|
E:GLY141
|
3.3
|
64.1
|
1.0
|
N
|
E:GLY141
|
3.4
|
59.5
|
1.0
|
HD3
|
E:ARG144
|
3.5
|
59.5
|
1.0
|
CG
|
E:LYS145
|
3.9
|
64.0
|
1.0
|
HG2
|
E:LYS145
|
3.9
|
76.9
|
1.0
|
HD2
|
E:LYS145
|
4.0
|
87.8
|
1.0
|
CB
|
E:ARG144
|
4.1
|
47.8
|
1.0
|
HD2
|
E:ARG144
|
4.1
|
59.5
|
1.0
|
CD
|
E:ARG144
|
4.2
|
49.6
|
1.0
|
HA3
|
E:GLY141
|
4.2
|
78.4
|
1.0
|
H
|
E:LYS145
|
4.2
|
60.0
|
1.0
|
HB2
|
E:ARG144
|
4.4
|
57.4
|
1.0
|
C
|
E:THR140
|
4.4
|
57.5
|
1.0
|
CD
|
E:LYS145
|
4.5
|
73.1
|
1.0
|
CG
|
E:ARG144
|
4.6
|
47.6
|
1.0
|
N
|
E:GLN142
|
4.6
|
68.2
|
1.0
|
HG2
|
E:ARG144
|
4.6
|
57.2
|
1.0
|
HH11
|
E:ARG144
|
4.6
|
76.9
|
1.0
|
N
|
E:LYS145
|
4.7
|
50.0
|
1.0
|
HE2
|
E:LYS145
|
4.7
|
96.2
|
1.0
|
HA
|
E:THR140
|
4.8
|
71.8
|
1.0
|
HA
|
E:GLN142
|
4.9
|
86.3
|
1.0
|
H
|
E:ARG144
|
4.9
|
60.2
|
1.0
|
|
Sodium binding site 6 out
of 10 in 8qtf
Go back to
Sodium Binding Sites List in 8qtf
Sodium binding site 6 out
of 10 in the Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1.
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 6 of Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Na1204
b:80.8
occ:1.00
|
OE1
|
G:GLN200
|
2.5
|
86.3
|
1.0
|
HB3
|
E:GLU215
|
2.9
|
119.8
|
1.0
|
O
|
E:GLU215
|
2.9
|
85.7
|
1.0
|
HD22
|
G:ASN196
|
3.0
|
94.3
|
1.0
|
HB2
|
E:LYS218
|
3.0
|
91.7
|
1.0
|
OE1
|
E:GLU215
|
3.2
|
98.7
|
1.0
|
HA
|
E:GLU215
|
3.2
|
115.4
|
1.0
|
HD21
|
G:ASN196
|
3.3
|
94.3
|
1.0
|
ND2
|
G:ASN196
|
3.4
|
78.5
|
1.0
|
OD2
|
E:ASP219
|
3.4
|
81.7
|
1.0
|
OD1
|
E:ASP219
|
3.5
|
76.4
|
1.0
|
CB
|
E:GLU215
|
3.6
|
99.8
|
1.0
|
CG
|
E:ASP219
|
3.6
|
78.8
|
1.0
|
C
|
E:GLU215
|
3.6
|
90.9
|
1.0
|
CA
|
E:GLU215
|
3.6
|
96.1
|
1.0
|
CD
|
G:GLN200
|
3.7
|
82.3
|
1.0
|
H
|
E:ASP219
|
3.9
|
85.1
|
1.0
|
CD
|
E:GLU215
|
4.0
|
102.1
|
1.0
|
CB
|
E:LYS218
|
4.0
|
76.4
|
1.0
|
HG2
|
E:GLU215
|
4.1
|
117.5
|
1.0
|
HE22
|
G:GLN200
|
4.1
|
90.3
|
1.0
|
CG
|
E:GLU215
|
4.1
|
97.9
|
1.0
|
N
|
E:ASP219
|
4.2
|
70.9
|
1.0
|
HB3
|
E:LYS218
|
4.2
|
91.7
|
1.0
|
NE2
|
G:GLN200
|
4.3
|
75.2
|
1.0
|
HG3
|
E:LYS218
|
4.4
|
95.6
|
1.0
|
HB2
|
E:GLU215
|
4.4
|
119.8
|
1.0
|
CG
|
G:ASN196
|
4.5
|
73.2
|
1.0
|
H
|
E:LYS218
|
4.6
|
94.0
|
1.0
|
CB
|
E:ASP219
|
4.7
|
74.1
|
1.0
|
HA
|
E:ASP219
|
4.8
|
84.1
|
1.0
|
C
|
E:LYS218
|
4.8
|
68.6
|
1.0
|
CG
|
E:LYS218
|
4.8
|
79.6
|
1.0
|
HG2
|
G:GLN200
|
4.8
|
87.3
|
1.0
|
HB2
|
E:ASP219
|
4.8
|
89.0
|
1.0
|
CG
|
G:GLN200
|
4.8
|
72.8
|
1.0
|
CA
|
E:LYS218
|
4.8
|
73.1
|
1.0
|
CA
|
E:ASP219
|
4.8
|
70.1
|
1.0
|
N
|
E:SER216
|
4.9
|
88.9
|
1.0
|
HG3
|
G:GLN200
|
5.0
|
87.3
|
1.0
|
|
Sodium binding site 7 out
of 10 in 8qtf
Go back to
Sodium Binding Sites List in 8qtf
Sodium binding site 7 out
of 10 in the Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1.
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 7 of Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Na1203
b:59.0
occ:1.00
|
O
|
G:GLU6
|
2.6
|
50.4
|
1.0
|
HA
|
G:GLU6
|
2.9
|
79.8
|
1.0
|
O
|
G:HOH1362
|
3.0
|
52.1
|
1.0
|
HB
|
G:VAL9
|
3.0
|
59.4
|
1.0
|
O
|
H:HOH1357
|
3.1
|
54.5
|
1.0
|
HB2
|
G:TYR10
|
3.2
|
54.8
|
1.0
|
HG12
|
G:VAL9
|
3.2
|
54.4
|
1.0
|
H
|
G:TYR10
|
3.4
|
50.9
|
1.0
|
C
|
G:GLU6
|
3.4
|
58.4
|
1.0
|
CA
|
G:GLU6
|
3.5
|
66.5
|
1.0
|
N
|
G:TYR10
|
3.7
|
42.4
|
1.0
|
HG3
|
G:GLU6
|
3.8
|
103.2
|
1.0
|
CB
|
G:VAL9
|
3.8
|
49.4
|
1.0
|
CG1
|
G:VAL9
|
3.8
|
45.3
|
1.0
|
HG11
|
G:VAL9
|
3.9
|
54.4
|
1.0
|
HB3
|
G:GLU6
|
4.0
|
87.0
|
1.0
|
CB
|
G:TYR10
|
4.1
|
45.6
|
1.0
|
HD1
|
G:TYR10
|
4.2
|
51.8
|
1.0
|
CB
|
G:GLU6
|
4.2
|
72.5
|
1.0
|
HA
|
G:TYR10
|
4.2
|
54.7
|
1.0
|
CA
|
G:TYR10
|
4.3
|
45.6
|
1.0
|
C
|
G:VAL9
|
4.3
|
46.0
|
1.0
|
CG
|
G:GLU6
|
4.5
|
86.0
|
1.0
|
O
|
G:ARG5
|
4.5
|
56.9
|
1.0
|
H
|
G:VAL9
|
4.5
|
54.8
|
1.0
|
CA
|
G:VAL9
|
4.6
|
43.5
|
1.0
|
N
|
G:GLU7
|
4.6
|
59.0
|
1.0
|
HB3
|
G:TYR10
|
4.6
|
54.8
|
1.0
|
HG13
|
G:VAL9
|
4.7
|
54.4
|
1.0
|
N
|
G:GLU6
|
4.8
|
65.8
|
1.0
|
N
|
G:VAL9
|
4.8
|
45.6
|
1.0
|
HA
|
G:GLU7
|
4.9
|
71.0
|
1.0
|
HG21
|
G:VAL9
|
4.9
|
61.5
|
1.0
|
CD1
|
G:TYR10
|
4.9
|
43.1
|
1.0
|
HE2
|
H:HIS81
|
4.9
|
60.5
|
1.0
|
HZ2
|
G:LYS13
|
5.0
|
61.2
|
1.0
|
CG2
|
G:VAL9
|
5.0
|
51.3
|
1.0
|
CG
|
G:TYR10
|
5.0
|
42.5
|
1.0
|
|
Sodium binding site 8 out
of 10 in 8qtf
Go back to
Sodium Binding Sites List in 8qtf
Sodium binding site 8 out
of 10 in the Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1.
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 8 of Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Na1203
b:58.7
occ:1.00
|
O
|
H:LYS139
|
2.3
|
39.9
|
1.0
|
HE
|
H:ARG144
|
2.5
|
58.4
|
1.0
|
HD2
|
H:ARG144
|
2.7
|
50.8
|
1.0
|
NE
|
H:ARG144
|
3.1
|
48.6
|
1.0
|
CD
|
H:ARG144
|
3.4
|
42.3
|
1.0
|
C
|
H:LYS139
|
3.5
|
41.2
|
1.0
|
HA
|
H:PHE138
|
3.6
|
46.0
|
1.0
|
HG22
|
H:THR140
|
3.6
|
54.9
|
1.0
|
O
|
H:ALA136
|
3.6
|
33.8
|
1.0
|
C
|
H:PHE138
|
3.6
|
39.5
|
1.0
|
O
|
H:PHE138
|
3.7
|
41.7
|
1.0
|
O
|
H:GLU137
|
3.7
|
38.6
|
1.0
|
HG3
|
H:ARG144
|
3.8
|
45.2
|
1.0
|
HA
|
H:THR140
|
3.9
|
55.7
|
1.0
|
CA
|
H:PHE138
|
3.9
|
38.3
|
1.0
|
N
|
H:LYS139
|
4.0
|
38.3
|
1.0
|
C
|
H:GLU137
|
4.0
|
34.1
|
1.0
|
N
|
H:PHE138
|
4.1
|
38.8
|
1.0
|
HD3
|
H:ARG144
|
4.1
|
50.8
|
1.0
|
CG
|
H:ARG144
|
4.1
|
37.7
|
1.0
|
HH21
|
H:ARG144
|
4.2
|
69.5
|
1.0
|
HG23
|
H:THR140
|
4.3
|
54.9
|
1.0
|
HB2
|
H:ARG144
|
4.3
|
47.4
|
1.0
|
CZ
|
H:ARG144
|
4.3
|
60.0
|
1.0
|
H
|
H:LYS139
|
4.3
|
46.0
|
1.0
|
CG2
|
H:THR140
|
4.4
|
45.8
|
1.0
|
CA
|
H:LYS139
|
4.4
|
38.8
|
1.0
|
HO2
|
H:EDO1202
|
4.4
|
59.3
|
1.0
|
N
|
H:THR140
|
4.5
|
43.5
|
1.0
|
H
|
H:PHE138
|
4.6
|
46.6
|
1.0
|
CA
|
H:THR140
|
4.6
|
46.4
|
1.0
|
C
|
H:ALA136
|
4.6
|
33.9
|
1.0
|
NH2
|
H:ARG144
|
4.7
|
57.9
|
1.0
|
CB
|
H:ARG144
|
4.8
|
39.4
|
1.0
|
HA
|
H:GLU137
|
4.8
|
41.3
|
1.0
|
CA
|
H:GLU137
|
4.9
|
34.4
|
1.0
|
HG2
|
H:ARG144
|
5.0
|
45.2
|
1.0
|
|
Sodium binding site 9 out
of 10 in 8qtf
Go back to
Sodium Binding Sites List in 8qtf
Sodium binding site 9 out
of 10 in the Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1.
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 9 of Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Na1204
b:57.6
occ:1.00
|
OE2
|
H:GLU23
|
2.3
|
42.3
|
1.0
|
O
|
H:HOH1378
|
2.4
|
54.6
|
1.0
|
HG2
|
H:GLU23
|
3.0
|
48.1
|
1.0
|
HG3
|
H:GLU23
|
3.1
|
48.1
|
1.0
|
CD
|
H:GLU23
|
3.1
|
45.6
|
1.0
|
CG
|
H:GLU23
|
3.3
|
40.1
|
1.0
|
HZ1
|
G:LYS91
|
3.4
|
78.0
|
1.0
|
HH21
|
H:ARG20
|
3.5
|
41.4
|
1.0
|
HE2
|
G:LYS91
|
3.5
|
63.5
|
1.0
|
HE3
|
G:LYS91
|
3.5
|
63.5
|
1.0
|
CE
|
G:LYS91
|
3.9
|
52.9
|
1.0
|
NH2
|
H:ARG20
|
4.0
|
34.5
|
1.0
|
NZ
|
G:LYS91
|
4.1
|
64.9
|
1.0
|
HH22
|
H:ARG20
|
4.1
|
41.4
|
1.0
|
O
|
G:HOH1352
|
4.3
|
45.0
|
1.0
|
OE1
|
H:GLU23
|
4.3
|
46.7
|
1.0
|
OE2
|
G:GLU95
|
4.4
|
38.4
|
1.0
|
O
|
H:HOH1305
|
4.6
|
59.1
|
1.0
|
HZ2
|
G:LYS91
|
4.6
|
78.0
|
1.0
|
HZ3
|
G:LYS91
|
4.6
|
78.0
|
1.0
|
CB
|
H:GLU23
|
4.8
|
42.5
|
1.0
|
O
|
H:HOH1314
|
4.9
|
40.9
|
1.0
|
HE
|
H:ARG20
|
5.0
|
47.9
|
1.0
|
|
Sodium binding site 10 out
of 10 in 8qtf
Go back to
Sodium Binding Sites List in 8qtf
Sodium binding site 10 out
of 10 in the Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1.
Mono view
Stereo pair view
|
A full contact list of Sodium with other atoms in the Na binding
site number 10 of Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Na1202
b:63.1
occ:1.00
|
OE2
|
I:GLU73
|
2.5
|
65.5
|
1.0
|
OH
|
J:TYR10
|
2.7
|
60.5
|
1.0
|
HE1
|
J:TYR10
|
2.8
|
74.8
|
1.0
|
CD
|
I:GLU73
|
3.2
|
64.7
|
1.0
|
HH
|
J:TYR10
|
3.3
|
72.6
|
1.0
|
CE1
|
J:TYR10
|
3.4
|
62.3
|
1.0
|
O1
|
J:FMT1201
|
3.5
|
61.5
|
1.0
|
HG3
|
I:GLU73
|
3.5
|
73.2
|
1.0
|
CZ
|
J:TYR10
|
3.5
|
60.5
|
1.0
|
HG2
|
I:GLU73
|
3.5
|
73.2
|
1.0
|
HG23
|
I:ILE69
|
3.6
|
57.6
|
1.0
|
CG
|
I:GLU73
|
3.6
|
61.0
|
1.0
|
O2
|
J:FMT1201
|
3.7
|
81.6
|
1.0
|
C
|
J:FMT1201
|
3.8
|
65.0
|
1.0
|
HD1
|
I:HIS81
|
3.9
|
77.8
|
1.0
|
HG21
|
I:ILE69
|
4.0
|
57.6
|
1.0
|
OE1
|
I:GLU73
|
4.0
|
70.4
|
1.0
|
CG2
|
I:ILE69
|
4.1
|
48.0
|
1.0
|
HG22
|
I:ILE69
|
4.2
|
57.6
|
1.0
|
HO2
|
J:FMT1201
|
4.2
|
97.9
|
1.0
|
ND1
|
I:HIS81
|
4.3
|
64.8
|
1.0
|
HD11
|
I:ILE85
|
4.5
|
70.2
|
1.0
|
H
|
J:FMT1201
|
4.5
|
78.1
|
1.0
|
HB3
|
I:HIS81
|
4.7
|
79.6
|
1.0
|
CD1
|
J:TYR10
|
4.7
|
54.2
|
1.0
|
CE1
|
I:HIS81
|
4.8
|
63.7
|
1.0
|
HE1
|
I:HIS81
|
4.8
|
76.4
|
1.0
|
CE2
|
J:TYR10
|
4.8
|
57.6
|
1.0
|
HD21
|
J:LEU14
|
5.0
|
57.1
|
1.0
|
CG
|
I:HIS81
|
5.0
|
65.5
|
1.0
|
|
Reference:
E.Obergfell,
U.Hohmann,
A.Moretti,
M.Hothorn.
Mechanistic Insights Into the Function of 14-3-3 Proteins As Negative Regulators of Brassinosteroid Signaling. To Be Published.
Page generated: Wed Oct 9 13:15:57 2024
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