Sodium in PDB 8qop: Capra Hircus Reactive Intermediate Deaminase A - K78A

The structure of Capra Hircus Reactive Intermediate Deaminase A - K78A, PDB code: 8qop was solved by G.Rizzi, C.Visentin, S.Ricagno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.18 / 1.40
Space group	P 21 3
Cell size a, b, c (Å), α, β, γ (°)	88.61, 88.61, 88.61, 90, 90, 90
R / Rfree (%)	16.1 / 18.8

The binding sites of Sodium atom in the Capra Hircus Reactive Intermediate Deaminase A - K78A (pdb code 8qop). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Capra Hircus Reactive Intermediate Deaminase A - K78A, PDB code: 8qop:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Capra Hircus Reactive Intermediate Deaminase A - K78A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Capra Hircus Reactive Intermediate Deaminase A - K78A within 5.0Å range: probe atom residue distance (Å) B Occ B:Na201 b:30.0 occ:1.00 HE B:ARG120 2.0 30.7 1.0 NE B:ARG120 2.7 25.6 1.0 HH21 B:ARG120 2.9 31.7 1.0 HG2 B:ARG120 3.4 25.4 1.0 HD3 B:ARG120 3.5 28.4 1.0 NH2 B:ARG120 3.5 26.4 1.0 CZ B:ARG120 3.5 27.3 1.0 CD B:ARG120 3.6 23.7 1.0 CG B:ARG120 4.0 21.2 1.0 O B:HOH330 4.2 31.7 1.0 HG3 B:ARG120 4.2 25.4 1.0 HH22 B:ARG120 4.3 31.7 1.0 HD2 B:ARG120 4.5 28.4 1.0 NH1 B:ARG120 4.8 28.4 1.0 O B:HOH354 4.9 33.6 1.0

Sodium binding site 2 out of 2 in the Capra Hircus Reactive Intermediate Deaminase A - K78A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Capra Hircus Reactive Intermediate Deaminase A - K78A within 5.0Å range: probe atom residue distance (Å) B Occ B:Na202 b:30.0 occ:1.00 HE B:ARG107 2.2 30.9 1.0 HH11 B:ARG107 2.5 34.9 1.0 HB3 B:ARG107 3.0 23.9 1.0 NE B:ARG107 3.0 25.8 1.0 NH1 B:ARG107 3.3 29.1 1.0 CZ B:ARG107 3.6 28.6 1.0 HG2 B:ARG107 3.7 25.0 1.0 CB B:ARG107 3.9 19.9 1.0 O B:ARG107 3.9 21.4 1.0 HH12 B:ARG107 4.0 34.9 1.0 CG B:ARG107 4.1 20.9 1.0 CD B:ARG107 4.1 24.2 1.0 C B:ARG107 4.2 20.1 1.0 HA B:ALA108 4.2 24.0 1.0 HB3 B:ALA109 4.5 26.5 1.0 HB2 B:ARG107 4.5 23.9 1.0 H B:ALA109 4.5 23.1 1.0 HB2 B:ALA109 4.6 26.5 1.0 HE1 B:PHE89 4.6 38.6 1.0 HZ B:PHE89 4.6 40.1 1.0 CA B:ARG107 4.7 19.2 1.0 HD2 B:ARG107 4.7 29.0 1.0 HD3 B:ARG107 4.7 29.0 1.0 N B:ALA108 4.7 19.2 1.0 CA B:ALA108 4.8 20.0 1.0 N B:ALA109 4.8 19.3 1.0 NH2 B:ARG107 4.9 31.1 1.0 C B:ALA108 4.9 19.2 1.0 CB B:ALA109 5.0 22.1 1.0

G.Rizzi, C.Visentin, S.Ricagno. Capra Hircus Reactive Intermediate Deaminase A - K78A To Be Published.