Sodium in PDB 8qjk: Structure of the Cytoplasmic Domain of CSX23 From Vibrio Cholera in Complex with Cyclic Tetra-Adenylate (CA4)

The structure of Structure of the Cytoplasmic Domain of CSX23 From Vibrio Cholera in Complex with Cyclic Tetra-Adenylate (CA4), PDB code: 8qjk was solved by S.A.Mcmahon, S.Mcquarrie, T.M.Gloster, S.Gruschow, M.F.White, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.97 / 1.76
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	66.425, 66.425, 42.479, 90, 90, 90
R / Rfree (%)	24.3 / 27.2

The binding sites of Sodium atom in the Structure of the Cytoplasmic Domain of CSX23 From Vibrio Cholera in Complex with Cyclic Tetra-Adenylate (CA4) (pdb code 8qjk). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the Cytoplasmic Domain of CSX23 From Vibrio Cholera in Complex with Cyclic Tetra-Adenylate (CA4), PDB code: 8qjk:

Sodium binding site 1 out of 1 in the Structure of the Cytoplasmic Domain of CSX23 From Vibrio Cholera in Complex with Cyclic Tetra-Adenylate (CA4)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Cytoplasmic Domain of CSX23 From Vibrio Cholera in Complex with Cyclic Tetra-Adenylate (CA4) within 5.0Å range: probe atom residue distance (Å) B Occ C:Na101 b:28.3 occ:0.25 O C:HOH205 2.6 29.4 0.2 O C:HOH201 3.4 24.3 1.0 O5' C:A2 3.9 24.3 0.2 C3' C:A2 4.1 24.3 0.2 C3' C:A4 4.1 23.8 0.2 C3' C:A3 4.1 23.8 0.2 C3' C:A1 4.2 24.1 0.2 C5' C:A1 4.2 23.6 0.2 O5' C:A4 4.2 23.6 0.2 O5' C:A3 4.2 23.8 0.2 O5' C:A1 4.3 23.6 0.2 C5' C:A2 4.3 24.0 0.2 C5' C:A4 4.3 23.4 0.2 C5' C:A3 4.5 23.5 0.2 OP2 C:A3 4.6 24.4 0.2 O C:HOH206 4.7 39.9 1.0 C2' C:A4 4.7 23.9 0.2 OP2 C:A1 4.7 23.7 0.2 OP2 C:A4 4.7 23.9 0.2 C2' C:A3 4.7 23.9 0.2 C4' C:A1 4.7 23.8 0.2 C4' C:A2 4.8 24.1 0.2 C2' C:A2 4.8 24.4 0.2 C4' C:A4 4.8 23.6 0.2 C4' C:A3 4.9 23.6 0.2 OP2 C:A2 4.9 24.6 0.2 C2' C:A1 4.9 24.1 0.2 P C:A3 4.9 24.3 0.2 P C:A2 4.9 24.7 0.2 O3' C:A2 5.0 24.0 0.2 P C:A4 5.0 24.0 0.2

S.A.Mcmahon, S.Mcquarrie, T.M.Gloster, M.F.White, S.Gruschow, K.Ackermann, B.E.Bode. A Cyclic-Nucleotide Binding Membrane Protein Provides Crispr-Mediated Antiphage Defence in Vibrio Cholera To Be Published.